Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,029,698 – 5,029,800 |
Length | 102 |
Max. P | 0.999451 |
Location | 5,029,698 – 5,029,800 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 95.27 |
Mean single sequence MFE | -34.32 |
Consensus MFE | -32.62 |
Energy contribution | -32.82 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.11 |
Structure conservation index | 0.95 |
SVM decision value | 3.61 |
SVM RNA-class probability | 0.999451 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5029698 102 + 20766785 CACAGGGUGUAGUGUAAAUCAAAACGAUGGCUA---------ACCCAUCAAUGGGGCGCUGCAGUAGGCGCUGCAAGGCACCCAGACACCGAAAGCCAUUUAAAUGUCCUG ..(((((..(.((((..........(((((...---------..)))))..((((((..((((((....))))))..)).)))).))))(....)........)..))))) ( -34.80) >DroSec_CAF1 9746 102 + 1 CACAGGGUGUAGUGUAAAUCAAAACGAUGGCUA---------ACCCAUCAAUGGGGCGCUGCAGUAGGCGCUGCAAGGCACCCAGACACCGAAAGCCAUUUAAAUGUCCUG ..(((((..(.((((..........(((((...---------..)))))..((((((..((((((....))))))..)).)))).))))(....)........)..))))) ( -34.80) >DroSim_CAF1 9778 102 + 1 CACAGGGUGUAGUGUAAAUCAAAACGAUGGCUA---------ACCCAUCAAUGGGGCGCUGCAGUAGGCGCUGCAAGGCACCCAGACACCGAAAGCCAUUUAAAUGUCCUG ..(((((..(.((((..........(((((...---------..)))))..((((((..((((((....))))))..)).)))).))))(....)........)..))))) ( -34.80) >DroEre_CAF1 9772 111 + 1 CACAGGGUGUAGUGUAAAUCAAAACGAUGGCUAUUGGCAAUCCCCCAUCAAUGGGGCGCUGCAGUAGGCGCUGCAAGGCACCCAGACACCGAAAGCCAUUUAAAUGUCCUG ..(((((..(.((..........))(((((((.((((.....(((((....))))).((((((((....)))))..))).........)))).)))))))...)..))))) ( -36.70) >DroYak_CAF1 9916 102 + 1 CACAGGGUGUAGUGUAAAUCAAAACGUUGGCUA---------CCCCAUCAAUGGGGCGCUGCAGUAGGCGCUGCAAGGCACCCAAACACCGAAAGCCAUUUAAAUGUCCUG ..(((((..(.((((.........((((((...---------.....))))))(((.((((((((....)))))..))).)))..))))(....)........)..))))) ( -30.50) >consensus CACAGGGUGUAGUGUAAAUCAAAACGAUGGCUA_________ACCCAUCAAUGGGGCGCUGCAGUAGGCGCUGCAAGGCACCCAGACACCGAAAGCCAUUUAAAUGUCCUG ..(((((..(.((((..........(((((..............)))))..((((((..((((((....))))))..)).)))).))))(....)........)..))))) (-32.62 = -32.82 + 0.20)
Location | 5,029,698 – 5,029,800 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 95.27 |
Mean single sequence MFE | -33.92 |
Consensus MFE | -31.09 |
Energy contribution | -31.29 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.38 |
Structure conservation index | 0.92 |
SVM decision value | 0.97 |
SVM RNA-class probability | 0.892952 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5029698 102 - 20766785 CAGGACAUUUAAAUGGCUUUCGGUGUCUGGGUGCCUUGCAGCGCCUACUGCAGCGCCCCAUUGAUGGGU---------UAGCCAUCGUUUUGAUUUACACUACACCCUGUG ((((........((((((.((((((...((((((..(((((......))))))))))))))))).....---------.)))))).((..((.....))..))..)))).. ( -32.90) >DroSec_CAF1 9746 102 - 1 CAGGACAUUUAAAUGGCUUUCGGUGUCUGGGUGCCUUGCAGCGCCUACUGCAGCGCCCCAUUGAUGGGU---------UAGCCAUCGUUUUGAUUUACACUACACCCUGUG ((((........((((((.((((((...((((((..(((((......))))))))))))))))).....---------.)))))).((..((.....))..))..)))).. ( -32.90) >DroSim_CAF1 9778 102 - 1 CAGGACAUUUAAAUGGCUUUCGGUGUCUGGGUGCCUUGCAGCGCCUACUGCAGCGCCCCAUUGAUGGGU---------UAGCCAUCGUUUUGAUUUACACUACACCCUGUG ((((........((((((.((((((...((((((..(((((......))))))))))))))))).....---------.)))))).((..((.....))..))..)))).. ( -32.90) >DroEre_CAF1 9772 111 - 1 CAGGACAUUUAAAUGGCUUUCGGUGUCUGGGUGCCUUGCAGCGCCUACUGCAGCGCCCCAUUGAUGGGGGAUUGCCAAUAGCCAUCGUUUUGAUUUACACUACACCCUGUG ((((.........((((..(((.(((.(((((((......)))))))..))).).(((((....)))))))..)))).........((..((.....))..))..)))).. ( -35.30) >DroYak_CAF1 9916 102 - 1 CAGGACAUUUAAAUGGCUUUCGGUGUUUGGGUGCCUUGCAGCGCCUACUGCAGCGCCCCAUUGAUGGGG---------UAGCCAACGUUUUGAUUUACACUACACCCUGUG ((((.........(((((...(.(((.(((((((......)))))))..))).)((((((....)))))---------))))))..((..((.....))..))..)))).. ( -35.60) >consensus CAGGACAUUUAAAUGGCUUUCGGUGUCUGGGUGCCUUGCAGCGCCUACUGCAGCGCCCCAUUGAUGGGU_________UAGCCAUCGUUUUGAUUUACACUACACCCUGUG ((((........((((((.((((((...((((((..(((((......)))))))))))))))))...............)))))).((..((.....))..))..)))).. (-31.09 = -31.29 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:03 2006