Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,029,333 – 5,029,423 |
Length | 90 |
Max. P | 0.539274 |
Location | 5,029,333 – 5,029,423 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 103 |
Reading direction | forward |
Mean pairwise identity | 84.59 |
Mean single sequence MFE | -25.63 |
Consensus MFE | -16.68 |
Energy contribution | -17.83 |
Covariance contribution | 1.16 |
Combinations/Pair | 1.12 |
Mean z-score | -2.71 |
Structure conservation index | 0.65 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.539274 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5029333 90 + 20766785 ACCCAGGCGAGAGACC-------------CAGAAACCUAUGGACAAUGCCUAUGUCUACUACAAGGUAUUGUACCGCCCACUGCUUCCACCGGAAACAGUCAC .....((((......(-------------((........)))(((((((((.(((.....))))))))))))..)))).((((.((((...)))).))))... ( -26.90) >DroSec_CAF1 9387 90 + 1 ACCCAGGCGAGAGACC-------------CAGAAACCUAUGGACAAUGCCUAUGUCUACUACAAGGUAUUGUACCGCCCACUGCUUCCACCGGAAACAGUCAC .....((((......(-------------((........)))(((((((((.(((.....))))))))))))..)))).((((.((((...)))).))))... ( -26.90) >DroSim_CAF1 9419 90 + 1 ACCCAGGCGAGAGACC-------------CAGAAACCUAUGGACAAUGCCUAUGUCUACUACAAGGUAUUGUACCGCCCACUGCUUCCACCGGAAACAGUCAC .....((((......(-------------((........)))(((((((((.(((.....))))))))))))..)))).((((.((((...)))).))))... ( -26.90) >DroEre_CAF1 9407 90 + 1 ACUCAGGCGAGAGACC-------------CACAAAUCUAUGGACAAUGCCUAUGUCUACUACAAGGUAUUGUACCGCCCACUGCUUCCACCGGAAACAGUCAC .....((((......(-------------((........)))(((((((((.(((.....))))))))))))..)))).((((.((((...)))).))))... ( -25.90) >DroYak_CAF1 9552 90 + 1 ACUCAGGCGAGAGACC-------------CAGAAAUCUAUGGACAAUGCCUAUGUCUACUACAAGGUAUUGUACCGCCCACUGGUUUCACCGGAAACAGUCAC .(((....))).(((.-------------..((((((..((((((((((((.(((.....)))))))))))).....)))..))))))...(....).))).. ( -26.70) >DroPer_CAF1 17767 92 + 1 ACCCAG-CGAGACUCCCACGUAGUCGCACCACAAACCUAUGGACAAUGCCUAUGUAUACUAUAAGGUACUGUAG----------UUCAUCAGCGAACACUCGC .....(-((((((......))..((((.(((........)))(((.(((((.((((...))))))))).)))..----------.......))))...))))) ( -20.50) >consensus ACCCAGGCGAGAGACC_____________CAGAAACCUAUGGACAAUGCCUAUGUCUACUACAAGGUAUUGUACCGCCCACUGCUUCCACCGGAAACAGUCAC .....((((....................((........)).(((((((((.(((.....))))))))))))..)))).((((.(((.....))).))))... (-16.68 = -17.83 + 1.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:01:01 2006