Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,026,806 – 5,026,905 |
Length | 99 |
Max. P | 0.888340 |
Location | 5,026,806 – 5,026,905 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 91.32 |
Mean single sequence MFE | -30.80 |
Consensus MFE | -24.55 |
Energy contribution | -24.51 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.14 |
Mean z-score | -1.86 |
Structure conservation index | 0.80 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.888340 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5026806 99 + 20766785 GAACCAGCCCUGAGUCCUAUGCAUACGCAUAAAUAAUAAUGGGCAUGGAGCACGGAAGAUAUGGGGAUUACCAUGGCGCUACCAGGGAAGGGAGGGGAG ...((..((((...((((((((....)))))..............((((((.(....).(((((......)))))..))).)))))).))))..))... ( -32.20) >DroSec_CAF1 6865 94 + 1 GAACCAGCCCUGGGUCCUAUGCAUACGCAUAAAUAAUAAUGGGCAUGGAGCACGGAAGACGUGGGGGUUACCAUGGCGCUACGAG-----GGAGGGGAG ...((..((((.((((((((((....))))).........)))).(((.((.(....).(((((......))))))).)))).))-----))..))... ( -32.40) >DroSim_CAF1 6877 94 + 1 GAACCAGCCCUGGGUCCUAUGCAUACGCAUAAAUAAUAAUGGGCAUGGAGCACGGAAGACAUGGGGGUUACCAUGGCGCUACGAG-----GGAGGGGAG ...((..((((.((((((((((....))))).........)))).(((.((.(....).(((((......))))))).)))).))-----))..))... ( -32.80) >DroEre_CAF1 6819 88 + 1 GAACCAGCCCUGUGUCCUAUGCAUACGCAUAAAUAAUAAUGGGCAUGG-GCACGGAAGACUUG-GGGUUACCAUGGCGCCACGA---------GGGGAG ...((.((((.(((((((((((....))))).........))))))))-)).(....).((((-(((((.....))).)).)))---------)))... ( -28.60) >DroYak_CAF1 6966 90 + 1 GAACCAGCCCUGUGUCCUAUGCAUACGCAUAAAUAAUAAUGGGCAUGGAGCACGGAAGACAUGGGGGUUACCAUGGCGCUACGA---------GGGGAG .......(((((((((((((((....))))).........))))))..(((.(....).(((((......)))))..)))...)---------)))... ( -28.00) >consensus GAACCAGCCCUGGGUCCUAUGCAUACGCAUAAAUAAUAAUGGGCAUGGAGCACGGAAGACAUGGGGGUUACCAUGGCGCUACGAG_____GGAGGGGAG ...((.((((.......(((((....))))).........)))).(((.((.(....).(((((......))))))).)))............)).... (-24.55 = -24.51 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:57 2006