| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 5,025,907 – 5,025,997 |
| Length | 90 |
| Max. P | 0.922703 |
| Location | 5,025,907 – 5,025,997 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 91.15 |
| Mean single sequence MFE | -17.45 |
| Consensus MFE | -15.56 |
| Energy contribution | -15.95 |
| Covariance contribution | 0.39 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.89 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.922703 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5025907 90 - 20766785 GAGUAGCAA----ACACACACUCACCCUUACCCCUUGCUCCUCCUGAGCGUAUUUCUUGAUUUCACGCUCCAAAUCAAGCUGUCUCGUUGUUGU (((((((..----.......................((((.....)))).......(((((((........))))))))))).)))........ ( -16.70) >DroSec_CAF1 5920 90 - 1 GAGUAGCAA----ACACACACUCACCCUUACCCCUUGCUCCUCCUGAGCGAAUUUCUUGAUUUCACGCUCCAAAUCAAGCUGUCUCGUUGUUGU (((((((..----.....................((((((.....)))))).....(((((((........))))))))))).)))........ ( -18.10) >DroSim_CAF1 5928 90 - 1 GAGUAGCAA----ACACACACUCACCCUUACCCCUUGCUCCUCCUGAGCGAAUUUCUUGAUUUCACGCUCCAAAUCAAGCUGUCUCGUUGUUGU (((((((..----.....................((((((.....)))))).....(((((((........))))))))))).)))........ ( -18.10) >DroEre_CAF1 5849 87 - 1 GAGUAGCGA----ACACACACUCACCCUUACCCCUUGCUCCUCCUGAGCGAAUUUCUUGAUUUCACGCUCCAAAUCAAGCUGUCUCGUUGU--- (((((((..----.....................((((((.....)))))).....(((((((........))))))))))).))).....--- ( -18.10) >DroYak_CAF1 6019 90 - 1 GAGUAGCAA----ACACACACUCACCCUUACCCCUUGCUCCUCCUGAGCAAAUUUCUUGAUUUCACGCUCCAAAUCAAGCUGUCUCGUUGUUGU (((((((..----.....................((((((.....)))))).....(((((((........))))))))))).)))........ ( -18.40) >DroPer_CAF1 14393 87 - 1 G--UGGCUUAGGCUCACACACUCACCCUGACCCCCUGCUCCUCCUGAGCGUAUUUCUUGAUUUCACGCUCCAAAUCAAGCUGUUUCGAU----- (--((((....)).)))...................((((.....))))......((((((((........))))))))..........----- ( -15.30) >consensus GAGUAGCAA____ACACACACUCACCCUUACCCCUUGCUCCUCCUGAGCGAAUUUCUUGAUUUCACGCUCCAAAUCAAGCUGUCUCGUUGUUGU (((((((...........................((((((.....)))))).....(((((((........))))))))))).)))........ (-15.56 = -15.95 + 0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:56 2006