Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,019,458 – 5,019,548 |
Length | 90 |
Max. P | 0.997589 |
Location | 5,019,458 – 5,019,548 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 73.64 |
Mean single sequence MFE | -22.28 |
Consensus MFE | -7.99 |
Energy contribution | -10.18 |
Covariance contribution | 2.20 |
Combinations/Pair | 1.17 |
Mean z-score | -3.36 |
Structure conservation index | 0.36 |
SVM decision value | 2.89 |
SVM RNA-class probability | 0.997589 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5019458 90 + 20766785 UAAAAAGGUUAAGGAUAUGCAAGUUGAGCUACAGCCAAUUUAAAUGCAAAGGAGAAAAACGCUGAAGAGCGGCAAAGCCUUGGCUUUUUA ..((((((((((((...(((((((((.((....))))))))..................((((....)))))))...)))))))))))). ( -27.40) >DroVir_CAF1 97023 69 + 1 UAAAAAGGUUAAGGAUAUGCUUGUUGAUGUAG-UCUAAUUUAAAUGCAAAACGGC-AAAUGCUU--------------UAAG-----GGA ........((((((((.((((.(((..((((.-...........)))).))))))-).)).)))--------------))).-----... ( -10.10) >DroSec_CAF1 73866 90 + 1 UAAAAAGGUUAAGGAUAUGCAAGUUGAGCUACAGCCAAUUUAAAUGCAAAGAAGAAAGCCGCUGAAGAGCGGCAAAGCCUUGGCUUUUUA ..((((((((((((...(((((((((.((....)))))))....)))).........((((((....))))))....)))))))))))). ( -32.10) >DroSim_CAF1 77120 90 + 1 UAAAAAGGUUAAGGAUAUGCAAGUUGAGCUACAGCCAAUUUAAAUGCAAAGGAGAAAGCCGCUGAAGAGCGGCAAAGCCUUGGCUUUUUA ..((((((((((((...(((((((((.((....)))))))....)))).........((((((....))))))....)))))))))))). ( -32.10) >DroEre_CAF1 70737 71 + 1 UAAGAAGGUUAAGGAUAUGCAAGUUGAGCUGCAGCCAAUUUAAAUGCAAAGGAGAAGG------------------CUGCUGGCU-UUUG ...((((((((.......((.......)).((((((....................))------------------)))))))))-))). ( -15.15) >DroYak_CAF1 79154 71 + 1 UAAAAAGGUUAAGGAUAUGCAAGUUGAGCUACAGCCAAUUUAAAUGCAAAGGAGAAAA------------------GCCUUGGCU-UUUA ...(((((((((((...(((((((((.((....)))))))....))))..........------------------.))))))))-))). ( -16.84) >consensus UAAAAAGGUUAAGGAUAUGCAAGUUGAGCUACAGCCAAUUUAAAUGCAAAGGAGAAAA_CGCUG____________GCCUUGGCU_UUUA ......((((((((...(((((((((.((....)))))))....))))...........((((....))))......))))))))..... ( -7.99 = -10.18 + 2.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:53 2006