Locus 1281

Sequence ID 2R_DroMel_CAF1
Location 5,018,661 – 5,018,758
Length 97
Max. P 0.856695
window2220

overview

Window 0

Location 5,018,661 – 5,018,758
Length 97
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 80.36
Mean single sequence MFE -32.93
Consensus MFE -24.76
Energy contribution -25.68
Covariance contribution 0.92
Combinations/Pair 1.13
Mean z-score -1.79
Structure conservation index 0.75
SVM decision value 0.81
SVM RNA-class probability 0.856695
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 5018661 97 + 20766785
------------CCACAGAAUCAAGCUGAGGCUUCCUUUCCACGGCUUUUGGCUGUGUGAAUGGGCUUCCGGCCUGCUGAUUCAUUUAGCAUUCAUUUGAGCCGCUGCA
------------...(((..((((((((((((..((.(((((((((.....)))))).))).)))))).)))).((((((.....)))))).....))))....))).. ( -32.70)
>DroSec_CAF1 72887 97 + 1
------------CCACAGAAUCAAGCUGAGGCUUCCUUCCCACGGCUCUUGGCUGUGUGAAUGGGCUUCCGGCUUGCUGAUUCAUUUAGCAUUCAUUUGAGCCGCUGCA
------------.....(((((((((((((((((..(((.((((((.....)))))).))).)))))).)))))...))))))...((((.(((....)))..)))).. ( -32.80)
>DroSim_CAF1 76144 97 + 1
------------CCACAGAAUCAAGCUGAGGCUUCCUUCCCACGGCUCUUGGCUGUGUGAAUGGGCUUCCGGCUUGCUGAUUCAUUUAGCAUUCAUUUGAGCCGCUGCA
------------.....(((((((((((((((((..(((.((((((.....)))))).))).)))))).)))))...))))))...((((.(((....)))..)))).. ( -32.80)
>DroEre_CAF1 69930 109 + 1
CCUCGUCCACAUUUACAGGAUCAAACUGAGGCUUCCUUGCCACGGCUCAUGGCUGUGUGAAUGGGCUUCCGGCUUGCUGAUUCAUUUAGCACUCACUGGAGCCGCUGCA
.........((((((((.(..((..(((.(((......))).)))....))..).))))))))((((.((((..((((((.....))))))....))))))))...... ( -36.10)
>DroYak_CAF1 78344 109 + 1
CCACAUCAACAUCCACAGGAUCUGGCGGAGGCUUCCUUCCCAUGGCUCAUGGCUGUGUGAAUGGGCUUCCGGCUUGCUGAUUCAUUUAGCACUCAUUUGAGUCGCUGCA
.................(((((.(.(((((((((..(((.((((((.....)))))).))).))))))))).).....)))))...((((((((....)))).)))).. ( -36.40)
>DroAna_CAF1 74072 85 + 1
---------------CAGGCUCCACGGGAGACAUCCUUC-------UUGUGGU--UGUGAAUAGGCUUCCGGCUUGCUGAUUCGUUUAGCUUUCAUUUGAGCCGCUGCA
---------------..(((((((((((((......)))-------)))))..--.(((((.((((.....))))(((((.....))))).)))))..)))))...... ( -26.80)
>consensus
____________CCACAGAAUCAAGCUGAGGCUUCCUUCCCACGGCUCUUGGCUGUGUGAAUGGGCUUCCGGCUUGCUGAUUCAUUUAGCAUUCAUUUGAGCCGCUGCA
...............(((.........(((((((..(((.((((((.....)))))).))).)))))))(((((((((((.....)))))........))))))))).. (-24.76 = -25.68 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:52 2006