Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,389,267 – 1,389,395 |
Length | 128 |
Max. P | 0.711705 |
Location | 1,389,267 – 1,389,364 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.63 |
Mean single sequence MFE | -32.20 |
Consensus MFE | -24.62 |
Energy contribution | -26.46 |
Covariance contribution | 1.84 |
Combinations/Pair | 1.04 |
Mean z-score | -1.45 |
Structure conservation index | 0.76 |
SVM decision value | 0.08 |
SVM RNA-class probability | 0.573402 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1389267 97 + 20766785 UAACU-----------------GCGGCCCGAGCGACUUGCUGCUGACGGCAGCUUUGUGUCGAUGACGAUGCU------UUCAAAUGGGCGAAAGCUGAAUGGCAUUUUGGCCAUUUUCA .....-----------------..((((....((((..(((((.....))))).....)))).....((((((------((((.....((....)))))).))))))..))))....... ( -32.00) >DroSec_CAF1 16259 103 + 1 UAACU-----------------GAGGCCCAAGCGACUCGCUGCUGACGGCAGCUUUGUGUCGAUGACGAUGCUUUGCUUUUCAAAUGGGCGAAAGCUGAAUGGCAUUUUGUCCAUUUUCA .....-----------------(((....((((((...(((((.....)))))...((((((....)))))).)))))))))(((((((((((((((....))).))))))))))))... ( -34.20) >DroSim_CAF1 21007 103 + 1 UAACU-----------------GAGGCCCAAGCGACUUGCUGCUGACGGCAGCUUUGUGUCGAUGACGAUGCUUUGCUUUUCAAAUGGGCGAAAGCUGAAUGGCAUUUUGGCCAUUUUCA .....-----------------...((((((((((...(((((.....)))))...((((((....)))))).))))).......))))).......(((((((......)))))))... ( -33.41) >DroEre_CAF1 14432 82 + 1 --------------------------CCCAAGUGACUUGCUGCCGACGGCAGCUUUGUGCCGAU------GCU------UUCAAAUGGGCGAAAGCUGAAUGGCAUUUUGGCCAUUUUCA --------------------------.(((..(((...((((((...)))))).....((....------)).------.)))..)))((....)).(((((((......)))))))... ( -27.30) >DroYak_CAF1 12172 108 + 1 UAACUGUGCCCAAGCGUAGACUGAGGCCCAAGAGACUUGCUGCUGACGGCAGCUUUGUGCCGAU------GCU------UUCAAAUGGGCGAAAGCUGAAUGGCAUUUUGGCCAUUUUCA ...((((((....)))))).....((((.((((.....(((((.....)))))....(((((..------(((------(((........))))))....)))))))))))))....... ( -34.10) >consensus UAACU_________________GAGGCCCAAGCGACUUGCUGCUGACGGCAGCUUUGUGUCGAUGACGAUGCU______UUCAAAUGGGCGAAAGCUGAAUGGCAUUUUGGCCAUUUUCA .........................(((((........(((((.....)))))...((((((....)))))).............))))).......(((((((......)))))))... (-24.62 = -26.46 + 1.84)
Location | 1,389,267 – 1,389,364 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 80.63 |
Mean single sequence MFE | -28.44 |
Consensus MFE | -19.56 |
Energy contribution | -21.44 |
Covariance contribution | 1.88 |
Combinations/Pair | 1.04 |
Mean z-score | -1.57 |
Structure conservation index | 0.69 |
SVM decision value | 0.06 |
SVM RNA-class probability | 0.565981 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1389267 97 - 20766785 UGAAAAUGGCCAAAAUGCCAUUCAGCUUUCGCCCAUUUGAA------AGCAUCGUCAUCGACACAAAGCUGCCGUCAGCAGCAAGUCGCUCGGGCCGC-----------------AGUUA (((..(((((......))))))))(((((((......))))------))).(((....))).....((((((.(((.(.(((.....)))).))).))-----------------)))). ( -29.50) >DroSec_CAF1 16259 103 - 1 UGAAAAUGGACAAAAUGCCAUUCAGCUUUCGCCCAUUUGAAAAGCAAAGCAUCGUCAUCGACACAAAGCUGCCGUCAGCAGCGAGUCGCUUGGGCCUC-----------------AGUUA ....(((((.(.....)))))).((((...(((((..(((...((......(((....)))......((((....)))).))...)))..)))))...-----------------)))). ( -26.20) >DroSim_CAF1 21007 103 - 1 UGAAAAUGGCCAAAAUGCCAUUCAGCUUUCGCCCAUUUGAAAAGCAAAGCAUCGUCAUCGACACAAAGCUGCCGUCAGCAGCAAGUCGCUUGGGCCUC-----------------AGUUA ....((((((......)))))).((((...(((((..(((...........(((....)))......(((((.....)))))...)))..)))))...-----------------)))). ( -28.80) >DroEre_CAF1 14432 82 - 1 UGAAAAUGGCCAAAAUGCCAUUCAGCUUUCGCCCAUUUGAA------AGC------AUCGGCACAAAGCUGCCGUCGGCAGCAAGUCACUUGGG-------------------------- .........((((..((((.....(((((((......))))------)))------...))))....((((((...)))))).......)))).-------------------------- ( -25.80) >DroYak_CAF1 12172 108 - 1 UGAAAAUGGCCAAAAUGCCAUUCAGCUUUCGCCCAUUUGAA------AGC------AUCGGCACAAAGCUGCCGUCAGCAGCAAGUCUCUUGGGCCUCAGUCUACGCUUGGGCACAGUUA .......((((....((((.....(((((((......))))------)))------...))))....(((((.....)))))..........))))...(((((....)))))....... ( -31.90) >consensus UGAAAAUGGCCAAAAUGCCAUUCAGCUUUCGCCCAUUUGAA______AGCAUCGUCAUCGACACAAAGCUGCCGUCAGCAGCAAGUCGCUUGGGCCUC_________________AGUUA (((..(((((......))))))))......(((((..(((...........(((....)))......(((((.....)))))...)))..)))))......................... (-19.56 = -21.44 + 1.88)
Location | 1,389,290 – 1,389,395 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 83.78 |
Mean single sequence MFE | -37.24 |
Consensus MFE | -27.03 |
Energy contribution | -27.58 |
Covariance contribution | 0.55 |
Combinations/Pair | 1.07 |
Mean z-score | -1.80 |
Structure conservation index | 0.73 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.711705 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1389290 105 - 20766785 GAGUCGUCAGCGUCG---------UCAGCGCCGUCGUGGGUGAAAAUGGCCAAAAUGCCAUUCAGCUUUCGCCCAUUUGAA------AGCAUCGUCAUCGACACAAAGCUGCCGUCAGCA .........((..((---------.((((((..(((((((((((((((((......))))).....))))))))))..)).------.)).(((....)))......)))).))...)). ( -35.00) >DroSec_CAF1 16282 111 - 1 GCGUCGUCAGCGUCG---------UCAGAGGCGUCGUGGGUGAAAAUGGACAAAAUGCCAUUCAGCUUUCGCCCAUUUGAAAAGCAAAGCAUCGUCAUCGACACAAAGCUGCCGUCAGCA ((..((.((((...(---------((.((((((..((((((((((((((.(.....))))).....)))))))).((((.....))))))..)))).))))).....)))).))...)). ( -34.60) >DroSim_CAF1 21030 111 - 1 GCGUCGUCAGCGUCG---------UCAGCGGCGUCGUGGGUGAAAAUGGCCAAAAUGCCAUUCAGCUUUCGCCCAUUUGAAAAGCAAAGCAUCGUCAUCGACACAAAGCUGCCGUCAGCA ((..((.((((((((---------....))))((((((((((((((((((......))))).....)))))))))((((.....))))..........)))).....)))).))...)). ( -39.20) >DroEre_CAF1 14446 108 - 1 GCGUCGUCAGCGUCGUCAGCGUCGUCAGCGCCGCCGUGGGUGAAAAUGGCCAAAAUGCCAUUCAGCUUUCGCCCAUUUGAA------AGC------AUCGGCACAAAGCUGCCGUCGGCA (((.(((..(((.((....)).)))..))).))).(((((((((((((((......))))).....)))))))))).....------.((------..(((((......)))))...)). ( -43.00) >DroYak_CAF1 12212 90 - 1 GCGUCG------------------UCAGCGCGGCCGUGGGUGAAAAUGGCCAAAAUGCCAUUCAGCUUUCGCCCAUUUGAA------AGC------AUCGGCACAAAGCUGCCGUCAGCA ((..((------------------.((((...((((((((((((((((((......))))).....))))))))))..((.------...------.))))).....)))).))...)). ( -34.40) >consensus GCGUCGUCAGCGUCG_________UCAGCGCCGUCGUGGGUGAAAAUGGCCAAAAUGCCAUUCAGCUUUCGCCCAUUUGAA______AGCAUCGUCAUCGACACAAAGCUGCCGUCAGCA ..((((...(((............((((.......(((((((((((((((......))))).....))))))))))))))............)))...)))).....((((....)))). (-27.03 = -27.58 + 0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:22 2006