Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,017,676 – 5,017,766 |
Length | 90 |
Max. P | 0.671498 |
Location | 5,017,676 – 5,017,766 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 97.22 |
Mean single sequence MFE | -22.65 |
Consensus MFE | -22.01 |
Energy contribution | -22.08 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.04 |
Mean z-score | -1.63 |
Structure conservation index | 0.97 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.671498 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5017676 90 - 20766785 CAUAUCUAAUUAUAAGUUUUCAAAUUGCUUGCCAAUCUCCGGAUGAUUGAUUGAUUGAACGGGGCGUAUGGGUAAUGCAUGGAGAACAGA ...............((((((....((((((((...(((((..(((((....)))))..)))))......))))).)))..))))))... ( -23.80) >DroSec_CAF1 71901 90 - 1 CAGAUCUAAUUAUAAGUUUUCAAAUUGCUUGCCAAUCUCCGGAUGAUUGAUUGAUUGAACGGGGCGUAUGGGUAAUGCAUGGAGAACAGA ...............((((((....((((((((...(((((..(((((....)))))..)))))......))))).)))..))))))... ( -23.80) >DroSim_CAF1 75185 90 - 1 CAGAUCUAAUUAUAAGUUUUCAAAUUGCUUGCCAAUCUCCGGAUGAUUGAUUGAUUGAACGGGGCGUAUGGGUAAUGCAUGGAGAACAGA ...............((((((....((((((((...(((((..(((((....)))))..)))))......))))).)))..))))))... ( -23.80) >DroYak_CAF1 77339 90 - 1 CAGAUAUAAUUAUAAGUUUUCAAAUUGCUUGCCAAUCUGCGAAUGAUUGAUUGAUUGAACGGGGCGUAUGGGUAAUGCAUGGAAAACAGA ...............((((((....((((((((....((((..((.(..(....)..).))...))))..))))).)))..))))))... ( -19.20) >consensus CAGAUCUAAUUAUAAGUUUUCAAAUUGCUUGCCAAUCUCCGGAUGAUUGAUUGAUUGAACGGGGCGUAUGGGUAAUGCAUGGAGAACAGA ...............((((((....((((((((...(((((..(((((....)))))..)))))......))))).)))..))))))... (-22.01 = -22.08 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:48 2006