Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,016,341 – 5,016,455 |
Length | 114 |
Max. P | 0.809380 |
Location | 5,016,341 – 5,016,455 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 119 |
Reading direction | reverse |
Mean pairwise identity | 89.05 |
Mean single sequence MFE | -36.70 |
Consensus MFE | -26.95 |
Energy contribution | -28.75 |
Covariance contribution | 1.80 |
Combinations/Pair | 1.13 |
Mean z-score | -2.10 |
Structure conservation index | 0.73 |
SVM decision value | 0.64 |
SVM RNA-class probability | 0.809380 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5016341 114 - 20766785 GGAGCUGAGCGGGUGGUUUGGGUGGCU-----CAACAUUAUGCUGGCACCCCACCUUCCGUCACUUCAUUCGCUCGGCUCUAGGCUCUGUUAUACAGCUUAUAGCUUUUCAAACUUAAU ((((((((((((((((...((((((..-----...((......)).....)))))).........))))))))))))))))((((((((.....))).....)))))............ ( -37.90) >DroSec_CAF1 70607 114 - 1 GGAGCUGAGCGGGUGGUUUGGGUGGCU-----CAACAUUAUGCUGGCACCCCACCUUCCGCCACUUCAUUCGCUUGGCUCUAGGCUCUGUUAUACAGCUUAUAGCUUUUCAAACUUAAU (((((..((((((((((..((((((..-----...((......)).....))))))...)))))).....))))..)))))((((((((.....))).....)))))............ ( -38.90) >DroEre_CAF1 67663 114 - 1 GGGGCUGAGCGGGUGGUUUGGGUGGCU-----CCACAUUAUGCUGGCGCCCCACCUUCCGCCACUUCAUUCGCUCGGCUCUAGGCUCUGUUAUACAGCUUAUAGCUUUUCAAACUUAAU (((((((((((((((((..(((((((.-----(((........))).)))..))))...)))))).....)))))))))))((((((((.....))).....)))))............ ( -42.80) >DroYak_CAF1 76039 114 - 1 GGAGCUGAGCGGGUGGCUUGGGUGGUU-----CAACAUUAUGCUGGCGCCCCACCUUCCGCCACUUCAUUCGCUCGACUCUAGGCUCUGUUAUACAGCUUAUAGCUUUUCAAACUUAAU ((((.((((((((((((..((((((..-----(..((......))..)..))))))...)))))).....)))))).))))((((((((.....))).....)))))............ ( -37.60) >DroAna_CAF1 71382 109 - 1 GGUGGUG---------UUUGGGUGGUUUUGUACAACAUUAUGCUGGCACCACC-ACUCUGCCACUUCAUUCGCUCGGCCCUAGGCUCUGUUAUACAGCUUAUAGCUUUUCAAACUUAAU (((((((---------(..(.(((((.((....)).))))).)..))))))))-.....................(((..((((((.........))))))..)))............. ( -26.30) >consensus GGAGCUGAGCGGGUGGUUUGGGUGGCU_____CAACAUUAUGCUGGCACCCCACCUUCCGCCACUUCAUUCGCUCGGCUCUAGGCUCUGUUAUACAGCUUAUAGCUUUUCAAACUUAAU ((((((((((((((((....(((((..........((......))............)))))...))))))))))))))))((((((((.....))).....)))))............ (-26.95 = -28.75 + 1.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:47 2006