Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,016,032 – 5,016,140 |
Length | 108 |
Max. P | 0.821085 |
Location | 5,016,032 – 5,016,140 |
---|---|
Length | 108 |
Sequences | 4 |
Columns | 113 |
Reading direction | forward |
Mean pairwise identity | 84.36 |
Mean single sequence MFE | -22.58 |
Consensus MFE | -12.84 |
Energy contribution | -13.59 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.12 |
Mean z-score | -2.89 |
Structure conservation index | 0.57 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.821085 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5016032 108 + 20766785 UCGUGUGACAAACUCAAGGAACCAUUUCACACACACCCUUUAUACGUAUAUAUAUAUACAAAUGUGCAUUUGUGUAUAGUAUAUCAGUGUGAAAGACCAACGU-----ACAAA ..((((((..................))))))......(((((((..((((((((((((((((....)))))))))).))))))..)))))))..........-----..... ( -23.57) >DroSec_CAF1 70316 98 + 1 UCGUGUGACAAACUCAAGAAACCAUUUCACACACACCCUUUAUACGUAUAUA----------UGUGCAUUUGUGUAUAGUAUAUCAGUGUGAAACACACACGU-----ACAAA .((((((..........(((.....)))...(((((....(((((.((((((----------((......)))))))))))))...))))).....)))))).-----..... ( -23.20) >DroSim_CAF1 73801 98 + 1 UCGUGUGACAAACUCAAGAAACCAUUUCACACACACCCUUUAUACGUAUAUA----------UGUGCAUUUGUGUAUAGUAUAUCAGUGUGAAACACACACGU-----ACAAA .((((((..........(((.....)))...(((((....(((((.((((((----------((......)))))))))))))...))))).....)))))).-----..... ( -23.20) >DroYak_CAF1 75741 98 + 1 UCGUGUGACAAACUCAAGAAACCAUUAAACGCACACCCUUUAUACGUAUAUA----------UGUGCA----GUUGU-GUGUAUCAGUGUGUAACACACUCGUACUAUACAAA ..(((((......................)))))...........((((...----------.)))).----.((((-((((((.((((((...)))))).)))).)))))). ( -20.35) >consensus UCGUGUGACAAACUCAAGAAACCAUUUCACACACACCCUUUAUACGUAUAUA__________UGUGCAUUUGUGUAUAGUAUAUCAGUGUGAAACACACACGU_____ACAAA .((((((..........(....).((((((((.......(((((((((((............)))))......)))))).......))))))))..))))))........... (-12.84 = -13.59 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:46 2006