Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 5,008,710 – 5,008,800 |
Length | 90 |
Max. P | 0.981108 |
Location | 5,008,710 – 5,008,800 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 94.22 |
Mean single sequence MFE | -25.05 |
Consensus MFE | -23.25 |
Energy contribution | -22.95 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.12 |
Mean z-score | -1.61 |
Structure conservation index | 0.93 |
SVM decision value | 1.81 |
SVM RNA-class probability | 0.978291 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5008710 90 + 20766785 UGGCCAUUCGACCACUUGGUCUCUGCCAAUUGUCCAUGACGAACGAUCCGUUUUGGCUUUUACCUGUUACAUGGCCACGGCAUGCGCACA (((((((..((((....))))...((((((((((...)))))(((...))).))))).............)))))))..((....))... ( -24.80) >DroPse_CAF1 63920 90 + 1 UGGCCAUUCGACCACUUGGUCUCUGCCAAUUGUCCAUGACGAACGAUCCGUUUUGGCUUUUACCUGUUACAUGGACACGGCAAACAUACA ..(((....((((....)))).........((((((((..(((((...)))))((((........)))))))))))).)))......... ( -25.50) >DroEre_CAF1 58025 90 + 1 UGGCCAUUCGACCACUUGGUCUCUGCCAAUUGUCCAUGACGAACGAUCCGUUUUGGCUUUUACCUGUUACAUGGACGCGGCAUGCGCACA ((((.....((((....))))...))))...(((((((..(((((...)))))((((........)))))))))))(((.....)))... ( -27.00) >DroYak_CAF1 67874 90 + 1 UGGCCAUUCGACCACUUGGUCUCUGCCAAUUGUCCAUGACGAACGAUCCGUUUUGGCUUUUACCUGUUACAUGGACGCGGCAUGCGCACA ((((.....((((....))))...))))...(((((((..(((((...)))))((((........)))))))))))(((.....)))... ( -27.00) >DroAna_CAF1 63554 90 + 1 UGGCUAUUCGACCACUUGGUCUCUGCCAAUUGCCCAUGACGAACGAUCCGUUUUGGCUUUUACCUGUUACAUGGACACAGUGCCCAUACA ((((.....((((....))))...))))...(((...((((.......))))..))).............((((.(.....).))))... ( -20.50) >DroPer_CAF1 64105 90 + 1 UGGCCAUUCGACCACUUGGUCUCUGCCAAUUGUCCAUGACGAACGAUCCGUUUUGGCUUUUACCUGUUACAUGGACACGGCAAACAUACA ..(((....((((....)))).........((((((((..(((((...)))))((((........)))))))))))).)))......... ( -25.50) >consensus UGGCCAUUCGACCACUUGGUCUCUGCCAAUUGUCCAUGACGAACGAUCCGUUUUGGCUUUUACCUGUUACAUGGACACGGCAUGCACACA ..(((....((((....)))).........((((((((..(((((...)))))((((........)))))))))))).)))......... (-23.25 = -22.95 + -0.30)
Location | 5,008,710 – 5,008,800 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 90 |
Reading direction | reverse |
Mean pairwise identity | 94.22 |
Mean single sequence MFE | -29.08 |
Consensus MFE | -26.02 |
Energy contribution | -25.22 |
Covariance contribution | -0.80 |
Combinations/Pair | 1.19 |
Mean z-score | -1.99 |
Structure conservation index | 0.89 |
SVM decision value | 1.88 |
SVM RNA-class probability | 0.981108 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 5008710 90 - 20766785 UGUGCGCAUGCCGUGGCCAUGUAACAGGUAAAAGCCAAAACGGAUCGUUCGUCAUGGACAAUUGGCAGAGACCAAGUGGUCGAAUGGCCA (((..((((((....).))))).)))(((....))).....((.((((((((((........))))...((((....)))))))))))). ( -28.40) >DroPse_CAF1 63920 90 - 1 UGUAUGUUUGCCGUGUCCAUGUAACAGGUAAAAGCCAAAACGGAUCGUUCGUCAUGGACAAUUGGCAGAGACCAAGUGGUCGAAUGGCCA ......((((((.((((((((.....(((....)))...(((((...)))))))))))))...))))))((((....))))......... ( -30.00) >DroEre_CAF1 58025 90 - 1 UGUGCGCAUGCCGCGUCCAUGUAACAGGUAAAAGCCAAAACGGAUCGUUCGUCAUGGACAAUUGGCAGAGACCAAGUGGUCGAAUGGCCA ...(((.....)))(((((((.....(((....)))...(((((...))))))))))))...((((...((((....)))).....)))) ( -29.10) >DroYak_CAF1 67874 90 - 1 UGUGCGCAUGCCGCGUCCAUGUAACAGGUAAAAGCCAAAACGGAUCGUUCGUCAUGGACAAUUGGCAGAGACCAAGUGGUCGAAUGGCCA ...(((.....)))(((((((.....(((....)))...(((((...))))))))))))...((((...((((....)))).....)))) ( -29.10) >DroAna_CAF1 63554 90 - 1 UGUAUGGGCACUGUGUCCAUGUAACAGGUAAAAGCCAAAACGGAUCGUUCGUCAUGGGCAAUUGGCAGAGACCAAGUGGUCGAAUAGCCA ......(((.(((((((((((.....(((....)))...(((((...)))))))))))).....)))).((((....)))).....))). ( -27.90) >DroPer_CAF1 64105 90 - 1 UGUAUGUUUGCCGUGUCCAUGUAACAGGUAAAAGCCAAAACGGAUCGUUCGUCAUGGACAAUUGGCAGAGACCAAGUGGUCGAAUGGCCA ......((((((.((((((((.....(((....)))...(((((...)))))))))))))...))))))((((....))))......... ( -30.00) >consensus UGUACGCAUGCCGUGUCCAUGUAACAGGUAAAAGCCAAAACGGAUCGUUCGUCAUGGACAAUUGGCAGAGACCAAGUGGUCGAAUGGCCA ...(((.....)))(((((((.....(((....)))...(((((...))))))))))))...((((...((((....)))).....)))) (-26.02 = -25.22 + -0.80)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:45 2006