Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,974,272 – 4,974,381 |
Length | 109 |
Max. P | 0.746006 |
Location | 4,974,272 – 4,974,381 |
---|---|
Length | 109 |
Sequences | 4 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 76.70 |
Mean single sequence MFE | -25.26 |
Consensus MFE | -14.62 |
Energy contribution | -15.37 |
Covariance contribution | 0.75 |
Combinations/Pair | 1.19 |
Mean z-score | -1.93 |
Structure conservation index | 0.58 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.746006 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4974272 109 + 20766785 UCGCGGUUUCCAACGAGGCGUUUAAGCCAACAAGGGAAAAACAACUCCUUGAAAACAAACUGGCUUAAGGCAUGAGGCAACUACGAAGAUAUAGUUCAA-GCUGAAUAUA-- (((..(((.((......((.(((((((((.((((((.........)))))).........)))))))))))....)).)))..))).......((((..-...))))...-- ( -25.10) >DroSec_CAF1 38998 94 + 1 UCGC---------------GUUUAAGUCAACAAGGGUAAAACUACUCCUUGUAAAUAAACUGGCUUAAAGCAGGAGGCAGCUACGAAGUUAUAGUUCAA-ACUGAAAAUA-- ..((---------------.((((((((((((((((((....))).))))))........)))))))))))((...(.(((((........))))))..-.)).......-- ( -21.10) >DroSim_CAF1 41605 94 + 1 UCGC---------------GUUUAAGCCAACAAGGGGAACACUACUCCUUGUAAAUAAACUGGCUUAAAGCAGGAGGCAACUACGAAGUUAUAGUUCAA-ACUGAACAUA-- ((((---------------.(((((((((((((((((.......))))))))........))))))))))).(.((....)).))).......((((..-...))))...-- ( -28.20) >DroYak_CAF1 43704 112 + 1 UCGCGGUUUCCACCGAGGCGUUUACACCAAUAAGGGGAAAACUACUGCUUGAAAAAAAACUGGCUUAAGGCAGAAGGCAACUGCGAUGUUGUAGUUGAAAACUAAAGGCACG (((((((((((.((..((.(....).)).....)))))...((.((((((.................)))))).))..))))))))(((..((((.....))))...))).. ( -26.63) >consensus UCGC_______________GUUUAAGCCAACAAGGGGAAAACUACUCCUUGAAAAUAAACUGGCUUAAAGCAGGAGGCAACUACGAAGUUAUAGUUCAA_ACUGAAAAUA__ (((.................(((((((((((((((((.......))))))))........))))))))).....((....)).))).....((((.....))))........ (-14.62 = -15.37 + 0.75)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:40 2006