Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,971,398 – 4,971,501 |
Length | 103 |
Max. P | 0.795451 |
Location | 4,971,398 – 4,971,501 |
---|---|
Length | 103 |
Sequences | 4 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 85.83 |
Mean single sequence MFE | -34.87 |
Consensus MFE | -23.09 |
Energy contribution | -23.65 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.08 |
Mean z-score | -2.17 |
Structure conservation index | 0.66 |
SVM decision value | 0.60 |
SVM RNA-class probability | 0.795451 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4971398 103 - 20766785 AGGCGUGCGAGCCUCGUUAUAGGUAACCGUAACUGUAACUG-UAACUGGUUACGGCGUACACACAUGCAUGCAGACACAUCCUUGUGUGCUUCAGUGUGUGUGU ....(((((.((((......))))..((((((((((.....-..)).)))))))))))))((((((((((..(((((((....))))).))...)))))))))) ( -37.20) >DroSec_CAF1 36088 103 - 1 AGGCGUGCGAGCCUUGUUAUAGGUAACCGUAACUGUAACUG-UAACUGGUUACGUCGUACACACAUGCAUGCAGGCACAUCCUUGCGCGCUUCAGUGUGUGUGU .((((((...(((..(((((((................)))-)))).))))))))).(((((((((((.((((((......)))))).))....))))))))). ( -34.89) >DroSim_CAF1 38689 103 - 1 AGGCGUGCGAGCCUCGUUAUAGGUAACCGUAACUGUAACUG-UAACUGGUUACGUCGUACACACAUGCAUGCAGGCACAUCCUUGUGCGCUUCAGUGUGUGUGU .((((((...(((..(((((((................)))-)))).)))))))))..((((((((((.((.(((((((....))))).)).)))))))))))) ( -38.09) >DroYak_CAF1 40622 87 - 1 AGGCGUGCGAGCCUCGUUAUAGGUAACUGUAACUGUAACUGGUUACGGCGUAUGGCGUACACACAUGCAUGCAGACACAUCCUUGUG----------------- ..(((((((.(((..(((((((....))))))).((((....)))))))((.((.....)).)).)))))))...((((....))))----------------- ( -29.30) >consensus AGGCGUGCGAGCCUCGUUAUAGGUAACCGUAACUGUAACUG_UAACUGGUUACGGCGUACACACAUGCAUGCAGACACAUCCUUGUGCGCUUCAGUGUGUGUGU ..(((((((.((((......))))....(((..(((((((.......)))))))...))).....)))))))..(((((....)))))................ (-23.09 = -23.65 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:39 2006