| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,935,835 – 4,935,931 |
| Length | 96 |
| Max. P | 0.568671 |
| Location | 4,935,835 – 4,935,931 |
|---|---|
| Length | 96 |
| Sequences | 4 |
| Columns | 96 |
| Reading direction | forward |
| Mean pairwise identity | 85.59 |
| Mean single sequence MFE | -25.88 |
| Consensus MFE | -19.51 |
| Energy contribution | -19.45 |
| Covariance contribution | -0.06 |
| Combinations/Pair | 1.18 |
| Mean z-score | -1.48 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.568671 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4935835 96 + 20766785 AACGUAAAAUACUAAAUAGUUGGGAAAAUGCAAAUUGUGGUAUUAUUGGCACACGCACCAUCUGGCAACUUUGCGACCAGAUGUUUCCGGAUGGCC ..................(((.(((((.(((....((((.((....)).)))).))).((((((((........).)))))))))))).))).... ( -22.80) >DroSim_CAF1 4082 96 + 1 AACGAAAAAUACUAGUUGGUUGGGAAAAUGCAAAUUUUGGUAUUAUUGGCACGCGCACCAUCUGGCAACUCUGCGACCAGAUGUUUCCGGAUGGCC ..(((..((((((((....(((........)))...)))))))).)))((....)).((((((((.(((((((....)))).))).)))))))).. ( -25.90) >DroEre_CAF1 1793 95 + 1 AAAGCAAAAUACUAGUUAAUUAGGAAAAUGCACUUUGUGGUACAACUAGCA-GCGCACCAUCUGGCAACACUGCGAGCAGAUGUUUCCGGAUGGCC ...((......((((((.((((.(((.......))).))))..))))))..-..)).((((((((.(((((((....))).)))).)))))))).. ( -26.90) >DroYak_CAF1 4726 96 + 1 GAAGGAAAAUACUAGUUAAUUAGAAAAGUGCACCAUGUGGUAUUAUUAUCACGCGCACCAUCUGGCAACACUGCGACCAGAUGUUUCCGGAUGGCC ...........((((....))))....((((.....((((((....)))))))))).((((((((.(((((((....))).)))).)))))))).. ( -27.90) >consensus AAAGAAAAAUACUAGUUAAUUAGGAAAAUGCAAAUUGUGGUAUUAUUAGCACGCGCACCAUCUGGCAACACUGCGACCAGAUGUUUCCGGAUGGCC ...........((((....)))).....(((....((((.((....)).)))).)))((((((((.(((((((....))).)))).)))))))).. (-19.51 = -19.45 + -0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:35 2006