Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,929,319 – 4,929,416 |
Length | 97 |
Max. P | 0.786360 |
Location | 4,929,319 – 4,929,416 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 80.15 |
Mean single sequence MFE | -30.53 |
Consensus MFE | -23.35 |
Energy contribution | -22.77 |
Covariance contribution | -0.58 |
Combinations/Pair | 1.38 |
Mean z-score | -1.50 |
Structure conservation index | 0.76 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786360 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4929319 97 + 20766785 ACAAGCACCAUUGGUCCGAUGUCUUGGCAGGAUCUGGCAUCGGACUGACCUACGCAGUCGUCGUGGUGUGUUCUGCAAUUUGUAUAUCCUGAAAAGG ....(((((((.(((((((((((............)))))))))))(((.......)))...)))))))..................(((....))) ( -31.30) >DroSec_CAF1 18092 97 + 1 ACAAGCACCACUGGUCCGAUGUCUUGGCAGGAUCUGGCAUCGGGCUGACCUACGCAGUCGUUGUGGUUCGUUCUGCAAUUCGUAUAUUCUAAAAAGG ....(.(((((.(((((((((((............)))))))))))(((.......)))...))))).)............................ ( -25.70) >DroSim_CAF1 18233 97 + 1 ACAAGCACCACUGGUCCGAUGUCUUGGCAGGAUCUGGCAUCGGGCUGACCUACGCAGUCGUCGUGGUGCGUUCUGAAAUUCGUAUAUCCUGAAAAGG ....(((((((.(((((((((((............)))))))))))(((.......)))...)))))))..................(((....))) ( -35.40) >DroEre_CAF1 16130 91 + 1 ACAAGCACCACUGGUCCGAUGUCUUGGCAGGAUCUGGCAUCGGACUCACCUACGCAGUCAUUGUGGUGUGUUCUGCAAUUCCUAUUUGCUU------ ....(((((((.(((((((((((............)))))))))))...((....)).....))))))).....((((.......))))..------ ( -29.10) >DroYak_CAF1 18644 96 + 1 ACAAGCACCACUGGUCCGAUGUCUUGGCAGGAUCUGGCAUCGGACUCACCUACGCAGUUGUUGUGGUGUGUUCUGCAUUCCCUAUGUGCUUAAAGA- ..((((((....(((((((((((............)))))))))))(((((((((....).))))).)))...............)))))).....- ( -30.60) >DroPer_CAF1 15749 92 + 1 ACAAGCAUCAUUGCUCCGAUGUUCUGGCAGGAGCCGGCAUUGGUAUUACAUAUGCCAUUAUUGUGGUGAGUGUUACCA---AGAUAUGCCAAUGA-- .......((((((((((..(((....)))))))).((((((((((..((((.((((((....)))))).)))))))))---....))))))))))-- ( -31.10) >consensus ACAAGCACCACUGGUCCGAUGUCUUGGCAGGAUCUGGCAUCGGACUGACCUACGCAGUCGUUGUGGUGUGUUCUGCAAUUCGUAUAUGCUAAAAAG_ ....(((((((.(((((((((((............))))))))))).....(((....))).)))))))............................ (-23.35 = -22.77 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:25 2006