Locus 1263

Sequence ID 2R_DroMel_CAF1
Location 4,927,069 – 4,927,168
Length 99
Max. P 0.645257
window2190

overview

Window 0

Location 4,927,069 – 4,927,168
Length 99
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 78.23
Mean single sequence MFE -37.40
Consensus MFE -22.02
Energy contribution -23.50
Covariance contribution 1.48
Combinations/Pair 1.33
Mean z-score -1.62
Structure conservation index 0.59
SVM decision value 0.23
SVM RNA-class probability 0.645257
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4927069 99 - 20766785
UGAGCAAACAGAGGUCCGUGAGGAUCCUUCCGAAGAUUUGUCGUGGUCCACGCAGCGGUGGCUUCUUGUUGCUGGCUACCGCGUACAGUGAACCCUGGC--------
..........(((((((....))).))))..........((((.(((.(((...(((((((((..........))))))))).....))).))).))))-------- ( -36.40)
>DroPse_CAF1 14333 94 - 1
UAAGCAUACACAAGUCCAGCAGAAUACGUCCAAGAAUCUUCUUCGGACCUCGCAGCGG---CCUCUUG----------CCGGGGACAAUGGAUCCUGGUCCGGUUAC
..(((........((((.((.((....((((((((....)))).)))).))))..(((---(.....)----------))).))))..(((((....)))))))).. ( -27.20)
>DroSec_CAF1 15835 99 - 1
UGAGCAAACAGAGGUCCAUGAGGAUCCUUCCGAAGAUUUGACGUGGUCCACGCAGCGAUGGCUUUUUGUUGCUGGGUACCGCGUACAGUGGGCCCUGGC--------
........(((.(((((((..(((....))).......(((((((((..((.((((((..(....)..)))))).))))))))).))))))))))))..-------- ( -41.30)
>DroSim_CAF1 15998 99 - 1
UGAGCAAACAGAGGUCCAUGAGGAUCCUUCCGAAGAUUUGUCGUGGUCCACGCAGCGGUGGCUUUUUGUUGCUAGGUACCGCGUACAGUGGGCCCUGAC--------
........(((.(((((((..(((....))).......(((((((((((..(((((((.......)))))))..)).)))))).)))))))))))))..-------- ( -39.30)
>DroEre_CAF1 13800 99 - 1
UAAGCAAACAGAGGUCCAUGAGAAUCCUUCCGAGGAUUUUUCGGGGGCCCCGCAACGGUGACUUGUUGUUGCUGGGUACCGCGUACAGUGGGCCCUGGC--------
........(((.((((((((((((((((....)))))))))((.((((((.(((((..(.....)..))))).)))).)).))....))))))))))..-------- ( -43.00)
>DroYak_CAF1 16320 99 - 1
UGAGCAAACAGAGGUCCAUGAGAAUCCUUCCGAAAAUUUGUCGGGGACCACGCAGCGGUGGCUUGUUGCUGCUGGGUACCGCGUACAGUGGGCCCUGGC--------
........(((.((((((((((....))).........(((((.(((((...((((((..(....)..))))))))).)).)).)))))))))))))..-------- ( -37.20)
>consensus
UGAGCAAACAGAGGUCCAUGAGAAUCCUUCCGAAGAUUUGUCGUGGUCCACGCAGCGGUGGCUUCUUGUUGCUGGGUACCGCGUACAGUGGGCCCUGGC________
........(((.(((((((..(((((........)))))..(((((.(((.(((((((.......))))))))))...)))))....)))))))))).......... (-22.02 = -23.50 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:24 2006