Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,387,968 – 1,388,082 |
Length | 114 |
Max. P | 0.540791 |
Location | 1,387,968 – 1,388,082 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.99 |
Mean single sequence MFE | -36.42 |
Consensus MFE | -31.54 |
Energy contribution | -31.34 |
Covariance contribution | -0.20 |
Combinations/Pair | 1.06 |
Mean z-score | -1.21 |
Structure conservation index | 0.87 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.540791 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1387968 114 - 20766785 CCCUUUCCUGCGGCAUUAAAGUUCAUUCCCUUCUGGGCGCGUUUAUGCGAGUGCGGAAGAAAGUGAAAUUAAUGUUAAGUACGCGUGAAGCAUGAGAGUUC---GGUGCGGACUUAG--- ...((((.(((((((((((..((((((..((((((.((.(((....))).)).))))))..)))))).)))))))......)))).)))).....((((((---(...)))))))..--- ( -35.10) >DroSec_CAF1 14962 120 - 1 CCCCUUCCUGCGGCAUUAAAGUUCAUUCCCUUCUGGGCGCGUUUAUGCGAGUGCGGAAGAAAGUGAAAUUAAUGUUAAGUACGCGUGAAGCAUGAGAGUUGCAGAGUGCGGACUUAGUAG .......((((.(((((((..((((((..((((((.((.(((....))).)).))))))..)))))).)))))))(((((.(((((...((((....).)))...))))).))))))))) ( -38.50) >DroSim_CAF1 19715 117 - 1 CCCCUUCCUGCGGCAUUAAAGUUCAUUCCCUUCUGGGCGCGUUUAUGCGAGUGCGGAAGAAAGUGAAAUUAAUGUUAAGUACGCGUGAAGCAUGAGAGUUGCGGAGUGCGGACUUAG--- .....(((...((((((((..((((((..((((((.((.(((....))).)).))))))..)))))).))))))))..((((.((..(..(....)..)..))..))))))).....--- ( -37.60) >DroEre_CAF1 13057 114 - 1 CCGUUUUCUACGGCAUUAAAGUUCAUUCCCUUCUGGGCGCGUUUAUGCGAGCGCGGAAGAAAGUGAAAUUAAUGUUAAGUACGCGUGAAGCAUGUGAGUUC---GCUGCGGGCUUAG--- ((((.....))))((((((..((((((..((((((.((.(((....))).)).))))))..)))))).)))))).((((..((((((((.(....)..)))---)).)))..)))).--- ( -40.60) >DroYak_CAF1 10884 114 - 1 CCCUUUUCUACGGCAUUAAAGUUCAUUCCCUUCUGGGCGCGUUUAUGGGAGUGCGGAAGAAAGUGAAAUUAAUGUUAAGUACGCGUGAAGCAUGAGAGUUC---GUUGCGAGCUUAG--- ............(((((((..((((((..((((((.((.(.(....).).)).))))))..)))))).)))))))(((((.((((...(((......))).---..)))).))))).--- ( -30.30) >consensus CCCUUUCCUGCGGCAUUAAAGUUCAUUCCCUUCUGGGCGCGUUUAUGCGAGUGCGGAAGAAAGUGAAAUUAAUGUUAAGUACGCGUGAAGCAUGAGAGUUC___GGUGCGGACUUAG___ ............(((((((..((((((..((((((.((.(((....))).)).))))))..)))))).)))))))(((((.((((...(((......)))......)))).))))).... (-31.54 = -31.34 + -0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:06 2006