Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,911,341 – 4,911,441 |
Length | 100 |
Max. P | 0.887423 |
Location | 4,911,341 – 4,911,441 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 72.10 |
Mean single sequence MFE | -24.48 |
Consensus MFE | -5.70 |
Energy contribution | -8.02 |
Covariance contribution | 2.32 |
Combinations/Pair | 1.12 |
Mean z-score | -1.93 |
Structure conservation index | 0.23 |
SVM decision value | 0.95 |
SVM RNA-class probability | 0.887423 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4911341 100 + 20766785 UCAUAGCAAGAAUAGG--GGCAAACAGAAGCAUCAAGGCAAAAGCAAACCCAAUUCCAUGGAGGUGGACGAGGUGAUA----GAGGAAACUA---AAAGUUUGCCCUAC ..............((--(((((((.....((((...((....))....(((.(((....))).)))....))))...----.((....)).---...))))))))).. ( -28.50) >DroVir_CAF1 474 100 + 1 UCAAGAAAAGAUCACUAAAACAAAGAGUCGCAAGAAGAAAGAU-----GCGGAUGCCAUGGAUGUGGAUAAUGUGCCAUCAU----CCAACGUGGGUAAACUUCCUUAC ...........................((....))........-----..(((((((.(((((((((........))).)))----))).....))))....))).... ( -18.80) >DroSec_CAF1 438 100 + 1 UCAUAGCAAGAAUAGU--GGAAAACAGAAGCAUCAAGCCAAAAGCAAACCCAACUCCAUGGAGGUGGACGAGGUGACA----GAGGAAACUA---AAAGUUUGCCCUAC ............(((.--((.((((....(((((..((.....))....(((.(((....))).)))....)))).).----.((....)).---...)))).))))). ( -21.20) >DroSim_CAF1 438 100 + 1 UCAUAGCAAGAAUAGU--GGCAAACAGAAGCAUCAAGCCAAAAGCAAACCCAACUCCAUGGAGGUGGACGAGGUGACA----GAGGAAACUA---AAAGUUUGCCCUAC ............(((.--(((((((....(((((..((.....))....(((.(((....))).)))....)))).).----.((....)).---...)))))))))). ( -27.80) >DroYak_CAF1 438 100 + 1 UCAGGGCAAGAAUAGA--GGCAAACAGAAGCAUCAACCCAAAAGCAAACACAACUCUAUGGAGGUGGACGAGGUGCCC----GUCGAAUCUA---GAAAUUUGCCCUAC ..((((((((..((((--..(...........................(((..(((....))))))((((.(....))----))))..))))---....)))))))).. ( -26.10) >consensus UCAUAGCAAGAAUAGU__GGCAAACAGAAGCAUCAAGCCAAAAGCAAACCCAACUCCAUGGAGGUGGACGAGGUGACA____GAGGAAACUA___AAAGUUUGCCCUAC ..................(((((((........................((...(((((....)))))...))..........((....)).......))))))).... ( -5.70 = -8.02 + 2.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:16 2006