Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,908,120 – 4,908,212 |
Length | 92 |
Max. P | 0.984204 |
Location | 4,908,120 – 4,908,212 |
---|---|
Length | 92 |
Sequences | 5 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 75.24 |
Mean single sequence MFE | -13.29 |
Consensus MFE | -2.58 |
Energy contribution | -2.78 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.32 |
Structure conservation index | 0.19 |
SVM decision value | 1.97 |
SVM RNA-class probability | 0.984204 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4908120 92 - 20766785 AUCCCUGAAAAACAUUUUCAAUACAAUAUUGUAUUUUUACAAACAAAUUGUU---UAUUUUUCGGGGACCACACAUCACACACUCAGUAAACUUU .(((((((((((.......((((((....)))))).....((((.....)))---).)))))))))))........................... ( -17.40) >DroSec_CAF1 41350 95 - 1 AUCCCUUAAAACAUUUUUAAAUACAAUAUUGUAUUUUUACAAACAAAUUGGUGACUGUUUUUUGGGGACCACACUUUACAUACUCUGUAAACUUU .(((((.((((((.....(((((((....))))))).............(....)))))))..)))))......((((((.....)))))).... ( -17.50) >DroSim_CAF1 59953 95 - 1 AUCCCUUAAAACAUUUUUAAAUACAAUAUUGUAUUUUUACAAACAAAUUGGUGACUAUUUUUUGGGGACCGCACUUCACACACUCUGUAAACUUU .((((.............(((((((....)))))))...((((.((((.(....).))))))))))))........................... ( -13.30) >DroEre_CAF1 55959 82 - 1 AUCCCUCAUAACAUUUUAAAAUACAAGAUUGUAUUUUUACAAGCUGAUCAGUGUCUACUUUUUGG-------------CUUACUCAGUAUACUUC .................((((((((....))))))))...((((..(..(((....)))..)..)-------------))).............. ( -11.50) >DroYak_CAF1 60632 80 - 1 AUCCCUUAUAACAUUUUUAAAUACAAGAUUGUAUUUUAACAAACACUUUGGACUC--UUUUUUUG-------------CUUACUCUGUAAACUUC .(((..............(((((((....))))))).............)))...--....((((-------------(.......))))).... ( -6.73) >consensus AUCCCUUAAAACAUUUUUAAAUACAAUAUUGUAUUUUUACAAACAAAUUGGUGACUAUUUUUUGGGGACC_CAC_U_ACAUACUCUGUAAACUUU ..................(((((((....)))))))........................................................... ( -2.58 = -2.78 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:12 2006