Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,906,597 – 4,906,717 |
Length | 120 |
Max. P | 0.709204 |
Location | 4,906,597 – 4,906,717 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 91.17 |
Mean single sequence MFE | -48.60 |
Consensus MFE | -35.78 |
Energy contribution | -36.38 |
Covariance contribution | 0.60 |
Combinations/Pair | 1.06 |
Mean z-score | -2.00 |
Structure conservation index | 0.74 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.709204 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4906597 120 - 20766785 CGAAUGGUGGCUUGGAUGAGGCCAUCCGUUUGAGGAUCCACAUUGGCCGUUGCCUCGUCCAUAACAAGGAUGCGAUUCUCUCGCAGAAUGGCUCUGGCCAGGCAGACCAACUGGCGCUGA (((((((((((((.....)))))).)))))))..........(((((((..(((..((((.......))))((((.....)))).....)))..))))))).(((.((....))..))). ( -44.10) >DroSec_CAF1 39838 120 - 1 CGAAUGGUUGCUUGGAUGAGGCCAUCCGUUUGGAGAUCCACAUUGGCCGUGGCCUCGUCCAUCACAAGGAUGCGAUUCUCUCGCAGAAUUGCUCUGGCCAGGCAGACCAACUGGCGCUGA .........((.((((((((((((((((..(((....)))...)))..)))))))))))))......(((.((((((((.....))))))))))).(((((.........)))))))... ( -49.30) >DroSim_CAF1 58443 120 - 1 CGAAUGGUGGCUUGGAUGAGGCCAUCCGUUUGGGGAUCCACAUUGGCCGUGGCCUCGUCCAUCACCAGGAUGCGAUUCUCUCGCAGAAUGGCUCUGGCCAGGCAGACCAACUGGCGCUGA ....((((((..((((((((((((((((..(((....)))...)))..)))))))))))))))))))(((.((.(((((.....))))).))))).(((((.........)))))..... ( -53.30) >DroEre_CAF1 54409 120 - 1 CGAAUGGUGGCUUGGAUGAGGCCAUCUGUCUGCGGAUCCACAUUGGCAGUGGCCUCGUCCAUCACGAGAAUGCGGUUCUCACGCAGUAUGGCCCUGGCCAAGCAGAGCAACUGGCGCUGA ......((((..((((((((((((.(((((((.(....).))..)))))))))))))))))))))((((((...))))))..((.((.((((....)))).))...((.....))))... ( -51.20) >DroYak_CAF1 59032 120 - 1 CGAAUAGUGGCUUGAAUGAGGCCAUCUGUGUGCGAAUCCACAUUGGCAGUAGCCUCGUCCAUCACAAGAAUGCGAUUCUCGCGCAGAAUGGCCCUGGCCAAGCAGACCAACUGGCGCUGA ....((((((((((..(..(((((((((((((.(((((..(((((((....)))..((.....))...)))).))))).))))))).))))))..)..)))))...((....))))))). ( -45.10) >consensus CGAAUGGUGGCUUGGAUGAGGCCAUCCGUUUGCGGAUCCACAUUGGCCGUGGCCUCGUCCAUCACAAGGAUGCGAUUCUCUCGCAGAAUGGCUCUGGCCAGGCAGACCAACUGGCGCUGA ....(((((.(.((((((((((((((((..((......))...)))..))))))))))))).....((..((((.......))))(..((((....))))..).......))).))))). (-35.78 = -36.38 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:11 2006