Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,902,741 – 4,902,873 |
Length | 132 |
Max. P | 0.939931 |
Location | 4,902,741 – 4,902,849 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 115 |
Reading direction | reverse |
Mean pairwise identity | 81.93 |
Mean single sequence MFE | -27.04 |
Consensus MFE | -20.60 |
Energy contribution | -20.68 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.19 |
Mean z-score | -2.18 |
Structure conservation index | 0.76 |
SVM decision value | 1.30 |
SVM RNA-class probability | 0.939931 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4902741 108 - 20766785 CCAAGGGUCUAUAGAGGUCCGUUGAGUCCAAUGUUUUUCUGUAACCCUUACGAAAUAUAGGUAUGGUAUACCUGUAUUUGUUGAAUAAUCGUGAAA-------AGGUGUAAAAAA ((..((((.((((((((..(((((....)))))..))))))))))))(((((((((((((((((...)))))))))))..........))))))..-------.))......... ( -33.00) >DroSec_CAF1 35902 108 - 1 CCAAGGGUCUAUAAAGAUCCGUUGAGUCCAAUGUUUUCUUGCAACCCUUACGAAAUAUAGGUAUGGUAUACCUGUUUUUAUUAAACAAGUGUCAAA-------AGGUCUAAAAAU ((((((((.....((((..(((((....)))))...))))...))))))...(((.((((((((...)))))))).))).................-------.))......... ( -21.80) >DroSim_CAF1 54605 108 - 1 CCAAGGGUCUAUAAAGAUCCGUUGAGUCCAAUGUUUUCUUGUAACCCUUACGAAAUAUAGGUAUGGUAUACCUGUAUUUAUUGAUUAAUGGUCAAA-------AGGUCUAAAAAU ((((((((.(((((..(..(((((....)))))..)..)))))))))))...((((((((((((...)))))))))))).(((((.....))))).-------.))......... ( -30.30) >DroEre_CAF1 50528 103 - 1 CCAAGGGUCUAUAAAGGUCGUUUGAGUCCAAGGUUUUUUUGUAACCCUUUCGAAAUAUGGGUAUAGUAUACCUGUUUU-GAUGCAUUAUUGUUGAG----------UC-ACAAAU ..((((((.((((((((...((((....))))...))))))))))))))(((((((..((((((...)))))))))))-)).......((((....----------..-)))).. ( -21.30) >DroYak_CAF1 55152 114 - 1 CCAAGGGUCUAUAAAGGUCGUUUGAGUCCAAUGUUUUUUUGUAGCCCUUUCGAAAUAUAGGUACGGUAUACCUGUUUU-GUUGAAUUAUUGUUCAAUUAUUGUAAGUCAACAAAU ..(((((.(((((((((....(((....)))....)))))))))))))).......(((((((.....)))))))(((-(((((.((((.((......)).)))).)))))))). ( -28.80) >consensus CCAAGGGUCUAUAAAGGUCCGUUGAGUCCAAUGUUUUUUUGUAACCCUUACGAAAUAUAGGUAUGGUAUACCUGUUUUUGUUGAAUAAUUGUCAAA_______AGGUCUAAAAAU ..((((((.((((((((..(((((....)))))..)))))))))))))).......(((((((.....)))))))........................................ (-20.60 = -20.68 + 0.08)
Location | 4,902,774 – 4,902,873 |
---|---|
Length | 99 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 92.63 |
Mean single sequence MFE | -22.56 |
Consensus MFE | -20.26 |
Energy contribution | -20.34 |
Covariance contribution | 0.08 |
Combinations/Pair | 1.19 |
Mean z-score | -1.45 |
Structure conservation index | 0.90 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.911266 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4902774 99 - 20766785 AUUUCUUACCCGACUUUUGCUCCUCCAAGGGUCUAUAGAGGUCCGUUGAGUCCAAUGUUUUUCUGUAACCCUUACGAAAUAUAGGUAUGGUAUACCUGU (((((......((((((((......))))))))((((((((..(((((....)))))..))))))))........)))))((((((((...)))))))) ( -27.50) >DroSec_CAF1 35935 99 - 1 ACUUCUUACCCGACUUUUGCUCCUCCAAGGGUCUAUAAAGAUCCGUUGAGUCCAAUGUUUUCUUGCAACCCUUACGAAAUAUAGGUAUGGUAUACCUGU ..........................((((((.....((((..(((((....)))))...))))...)))))).......((((((((...)))))))) ( -19.40) >DroSim_CAF1 54638 99 - 1 ACUUCUUACCCGACUUUUGCUCCUCCAAGGGUCUAUAAAGAUCCGUUGAGUCCAAUGUUUUCUUGUAACCCUUACGAAAUAUAGGUAUGGUAUACCUGU ..........................((((((.(((((..(..(((((....)))))..)..))))))))))).......((((((((...)))))))) ( -22.00) >DroEre_CAF1 50556 99 - 1 ACUUCUUACCCGACUUCUGCUCCUCCAAGGGUCUAUAAAGGUCGUUUGAGUCCAAGGUUUUUUUGUAACCCUUUCGAAAUAUGGGUAUAGUAUACCUGU ....((((..((((((.((..(((....)))....)).))))))..))))....((((....(((((.(((...........))))))))...)))).. ( -20.60) >DroYak_CAF1 55191 99 - 1 ACUUCUUACCCGACUUAUGCUCCUCCAAGGGUCUAUAAAGGUCGUUUGAGUCCAAUGUUUUUUUGUAGCCCUUUCGAAAUAUAGGUACGGUAUACCUGU .........((((((((((.......(((((.(((((((((....(((....)))....))))))))))))))......))))))).)))......... ( -23.32) >consensus ACUUCUUACCCGACUUUUGCUCCUCCAAGGGUCUAUAAAGGUCCGUUGAGUCCAAUGUUUUUUUGUAACCCUUACGAAAUAUAGGUAUGGUAUACCUGU ..........................((((((.((((((((..(((((....)))))..)))))))))))))).......(((((((.....))))))) (-20.26 = -20.34 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:06 2006