Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,896,615 – 4,896,706 |
Length | 91 |
Max. P | 0.643143 |
Location | 4,896,615 – 4,896,706 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 68.65 |
Mean single sequence MFE | -25.75 |
Consensus MFE | -7.35 |
Energy contribution | -7.47 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.44 |
Mean z-score | -2.02 |
Structure conservation index | 0.29 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.643143 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4896615 91 + 20766785 AUGGAAUUACGGAAAAUAGUUGCCGAAGACAAGAGGCAGCCAGCUG-----GUUGGCAAGGCC-AACCCGCAAACCGCAUUCAAGCCACAGAAUGGC----------- ...((((..(((......((((((..........))))))..((.(-----((((((...)))-)))).))...))).))))..((((.....))))----------- ( -32.00) >DroPse_CAF1 28898 90 + 1 AUUGAAAAACAAAAAAUAGUUGGCAAAGACAAGGGCCGA--AGCUGAAGCCGUAGCCGUAGCCGAAGCCGAGG-----ACGAGAGCUACUUGUCGGU----------- .(((...(((........)))..))).(((((((((...--.((((..((....))..))))....)))..((-----.(....))).))))))...----------- ( -22.10) >DroSec_CAF1 29868 91 + 1 AUGGAAUUACGGAAAAUAGUUGCCGAAGACAAGAGGCAGCCAGCUG-----GUUGGCAAGGCC-AACCCGCAAACCGCAUUCAAGCCACAGAAUGGC----------- ...((((..(((......((((((..........))))))..((.(-----((((((...)))-)))).))...))).))))..((((.....))))----------- ( -32.00) >DroEre_CAF1 43994 91 + 1 AUGGAAUUACGGAAAAUAGUUGCCGAAGACAAGAGGCAGCCAGCUG-----GUUAGCAAGGCC-AACCCGCAAACCGCAUUCAAGCCGCAGAAUGGC----------- ...((((..(((......((((((..........))))))..((.(-----(((.((...)).-)))).))...))).))))..((((.....))))----------- ( -24.80) >DroYak_CAF1 48720 80 + 1 AUGGAAUUACGGAAAAUAGUGGCCAAAGACAAGAGGCAGCCAGUUG-----GUUGGCAAGGCC-AAACCGCA-----------AGCCACAGAAUGGC----------- .........(((.......(((((.....(....).(((((....)-----))))....))))-)..)))..-----------.((((.....))))----------- ( -18.90) >DroAna_CAF1 29436 96 + 1 AUAGAAUUACAGAAAAUAGUUACCAAAGACAAGAGACUGCCAA-----------GGCCAGGCU-GCCGCAAAAACCAAAUGGCAGCCGCAGAAUUGUGAACGCGGUCG ..................(((......)))....(((((((((-----------..(..((((-((((...........))))))))...)..))).....)))))). ( -24.70) >consensus AUGGAAUUACGGAAAAUAGUUGCCAAAGACAAGAGGCAGCCAGCUG_____GUUGGCAAGGCC_AACCCGCAAACCGCAUUCAAGCCACAGAAUGGC___________ ..................((((((..........))))))...................(((......................)))..................... ( -7.35 = -7.47 + 0.11)
Location | 4,896,615 – 4,896,706 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 68.65 |
Mean single sequence MFE | -26.83 |
Consensus MFE | -7.11 |
Energy contribution | -7.04 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.67 |
Mean z-score | -2.04 |
Structure conservation index | 0.27 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588701 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4896615 91 - 20766785 -----------GCCAUUCUGUGGCUUGAAUGCGGUUUGCGGGUU-GGCCUUGCCAAC-----CAGCUGGCUGCCUCUUGUCUUCGGCAACUAUUUUCCGUAAUUCCAU -----------(((((...)))))..((((((((...((.((((-(((...))))))-----).))(((.((((..........)))).)))....)))).))))... ( -31.50) >DroPse_CAF1 28898 90 - 1 -----------ACCGACAAGUAGCUCUCGU-----CCUCGGCUUCGGCUACGGCUACGGCUUCAGCU--UCGGCCCUUGUCUUUGCCAACUAUUUUUUGUUUUUCAAU -----------...(((((((((((...((-----.....))...))))))(((...(((....((.--...))....)))...))).........)))))....... ( -23.60) >DroSec_CAF1 29868 91 - 1 -----------GCCAUUCUGUGGCUUGAAUGCGGUUUGCGGGUU-GGCCUUGCCAAC-----CAGCUGGCUGCCUCUUGUCUUCGGCAACUAUUUUCCGUAAUUCCAU -----------(((((...)))))..((((((((...((.((((-(((...))))))-----).))(((.((((..........)))).)))....)))).))))... ( -31.50) >DroEre_CAF1 43994 91 - 1 -----------GCCAUUCUGCGGCUUGAAUGCGGUUUGCGGGUU-GGCCUUGCUAAC-----CAGCUGGCUGCCUCUUGUCUUCGGCAACUAUUUUCCGUAAUUCCAU -----------.......(((((...(((((((((..((.((((-(((...))))))-----).))..)))))...(((.(....))))..)))).)))))....... ( -28.10) >DroYak_CAF1 48720 80 - 1 -----------GCCAUUCUGUGGCU-----------UGCGGUUU-GGCCUUGCCAAC-----CAACUGGCUGCCUCUUGUCUUUGGCCACUAUUUUCCGUAAUUCCAU -----------(((((...)))))(-----------(((((..(-((((..((((..-----....))))..............))))).......))))))...... ( -21.99) >DroAna_CAF1 29436 96 - 1 CGACCGCGUUCACAAUUCUGCGGCUGCCAUUUGGUUUUUGCGGC-AGCCUGGCC-----------UUGGCAGUCUCUUGUCUUUGGUAACUAUUUUCUGUAAUUCUAU ..((((((..........)))((((((((...((((...((...-.))..))))-----------.))))))))..........)))..................... ( -24.30) >consensus ___________GCCAUUCUGUGGCUUGAAUGCGGUUUGCGGGUU_GGCCUUGCCAAC_____CAGCUGGCUGCCUCUUGUCUUCGGCAACUAUUUUCCGUAAUUCCAU ....................................(((((....((((..................))))(((..........))).........)))))....... ( -7.11 = -7.04 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:04 2006