Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,895,665 – 4,895,768 |
Length | 103 |
Max. P | 0.852379 |
Location | 4,895,665 – 4,895,768 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 94.97 |
Mean single sequence MFE | -29.00 |
Consensus MFE | -25.88 |
Energy contribution | -25.88 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.06 |
Mean z-score | -1.39 |
Structure conservation index | 0.89 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.852379 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4895665 103 - 20766785 UUGGCAAAAGAAUUCUCGCUGCAAAAUGGCGAAAAGUUCCCAAAAGGUGUUUAACAGGUCGCAAGUUUUAGACAGCUGGGGAAUGCAACUGUUGCACCA-GCGG ...((..........(((((.......)))))...((((((...((.(((((((.....(....)..))))))).)).))))))))..((((((...))-)))) ( -29.20) >DroSec_CAF1 28905 103 - 1 UGGGCAAAAGAAUUCUCGCUGCAGAAUGGCGAAAAGUUCGCAAAAGGUGUUUAACAGGUCGCAAGUUUUAGACAGCUGGGGAAUGCAACUGUUGCACCA-GCGG ...((....(((((.(((((.......)))))..)))))......(((((..(((((...(((..((((((....))))))..)))..)))))))))).-)).. ( -29.50) >DroSim_CAF1 47540 103 - 1 UGGGCAAAAGAAUUCUCGCUGCAGAAUGGCGAAAAGUUCGCAAAAGGUGUUUAACAGGUCGCAAGUUUUAGACAGCUGGGGAAUGCAACUGUUGCACCA-GCGG ...((....(((((.(((((.......)))))..)))))......(((((..(((((...(((..((((((....))))))..)))..)))))))))).-)).. ( -29.50) >DroEre_CAF1 43038 102 - 1 UGGGCAAAAGAAUUCCCGCUG-AAAAUGGCGAAAAGUUUCCUAAAGGUGUUUAACAGGUCGCAAGUUUUAGACAGCUGGGGAAUGCAACUGUUGCACCA-GAGG (((((((.((.((((((((((-(((((.((((...(((.((....)).....)))...))))..)))))...))))..))))))....)).)))).)))-.... ( -28.60) >DroYak_CAF1 47768 104 - 1 UGGGCAAAAGAAUUCUCGCUGCAAAAUAGCGAAAAGUUUCCUAAAGGUGUUUAACAGGUAGCAAGUUUUAGACAGCUGGGGAAUGCAACUGUUGCACCAAGCGG ((((.(((....((.((((((.....)))))).)).)))))))..(((((..(((((...(((..((((((....))))))..)))..))))))))))...... ( -28.20) >consensus UGGGCAAAAGAAUUCUCGCUGCAAAAUGGCGAAAAGUUCCCAAAAGGUGUUUAACAGGUCGCAAGUUUUAGACAGCUGGGGAAUGCAACUGUUGCACCA_GCGG ...((....(((((.(((((.......)))))..)))))......(((((..(((((...(((..((((((....))))))..)))..))))))))))..)).. (-25.88 = -25.88 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:03 2006