Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,895,529 – 4,895,629 |
Length | 100 |
Max. P | 0.568228 |
Location | 4,895,529 – 4,895,629 |
---|---|
Length | 100 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 85.73 |
Mean single sequence MFE | -32.79 |
Consensus MFE | -23.86 |
Energy contribution | -24.40 |
Covariance contribution | 0.54 |
Combinations/Pair | 1.15 |
Mean z-score | -2.53 |
Structure conservation index | 0.73 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.568228 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4895529 100 - 20766785 GCAGCAUAUGCAUAUUUGUAUGUG-------CAACUGGCUCAGCAAGUGCCCCACCAAUGUUGCUCAUACGCCGCGUGGUACGGCCAACAAUUUUCCGUGCCAGCUA ((.((....))......(((((.(-------(((((((....((....))....)))..))))).))))))).((.((((((((...........)))))))))).. ( -33.70) >DroSec_CAF1 28769 100 - 1 GCAGCAUAUGCAUAUUUGUAUGUG-------CAGCUGACUUUCCAAGUGCCCCACCAAUGUUGCUCAUACGCCGCGUGGCACGGCCAACAAUUUUCCGUGCCAGCUA ...(((((((((....))))))))-------)((((.....................((((.((......)).))))(((((((...........))))))))))). ( -32.40) >DroSim_CAF1 47404 100 - 1 GCAGCAUAUGCAUAUUUGUAUGUG-------CAGCUGACUUUCCAAGUGCCCCACCAAUGUUGCUCAUACGCCGCGUGGCACGGCCAACAAUUUUCCGUGCCAGCUA ...(((((((((....))))))))-------)((((.....................((((.((......)).))))(((((((...........))))))))))). ( -32.40) >DroEre_CAF1 42902 100 - 1 GCAGCAUAUGCAUAUUUGUAUGUG-------CAACUGGCUCUCCAAGUGCCCCACAAAUGUUGCUCAUACGUCGCGUGGUACGGCCAACAAUUUUCCGUGCCAGCUU (((((((.(((((((....)))))-------))...(((.(.....).)))......))))))).........((.((((((((...........)))))))))).. ( -33.60) >DroYak_CAF1 47632 100 - 1 GCAGCAUAUGCAUAUUUGUAUGUG-------CAACUGGCUCUCCAAGUGCCCCACAAAUGUUGCUCAUACGCCGCGUGGUACGGCCAACAAUUUUCCGUGCCAGCAA (((((((.(((((((....)))))-------))...(((.(.....).)))......))))))).........((.((((((((...........)))))))))).. ( -34.10) >DroAna_CAF1 28617 90 - 1 GCAGCUUAUGCAUAUUUGUGUGUGGCGGCUACAACUGGCACUCCGAGUGCCCUACAAAUGUUGCUCAUACGCCGCGUGGUACG-----------------CUAGCAA (((((.(((.(((....((((((((((((.......(((((.....)))))........))))).)))))))...)))))).)-----------------)).)).. ( -30.56) >consensus GCAGCAUAUGCAUAUUUGUAUGUG_______CAACUGGCUCUCCAAGUGCCCCACAAAUGUUGCUCAUACGCCGCGUGGUACGGCCAACAAUUUUCCGUGCCAGCUA ((((((((((((....))))))).............(((.(.....).)))........))))).........((.((((((((...........)))))))))).. (-23.86 = -24.40 + 0.54)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:02 2006