Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 1,387,121 – 1,387,229 |
Length | 108 |
Max. P | 0.651218 |
Location | 1,387,121 – 1,387,229 |
---|---|
Length | 108 |
Sequences | 3 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 74.38 |
Mean single sequence MFE | -40.07 |
Consensus MFE | -26.57 |
Energy contribution | -30.13 |
Covariance contribution | 3.56 |
Combinations/Pair | 1.06 |
Mean z-score | -1.38 |
Structure conservation index | 0.66 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.651218 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 1387121 108 + 20766785 GCUGGGUGUGUGCCUGAGUGGGAGCCAGUGCUCCGCAGGACUGGAGCUAUUGCUCCUGCUGGGGUGAGUGCCAUGUGCGAGUCUGUUUGCGCUGGGACUUAAAUGGCC (((........((((.((..(((((.(((((((((......)))))).))))))))..)).))))((((.(((.(((((((....)))))))))).))))....))). ( -50.60) >DroSim_CAF1 18925 96 + 1 GCU------------GAGUGGGUGCCACAGCUCCGCAGGACUGGAGCUCCUGCUCCUGUUGGGGUGAGUGCCAUGUGCGAGUCUGUUUGCGCUGGGACUUAAAUGGCC (((------------..((((...)))).((((((((((((.((....)).).))))).))))))((((.(((.(((((((....)))))))))).))))....))). ( -39.30) >DroYak_CAF1 10097 92 + 1 GAUGGGUGUGUGCCGGAGUGGGUGUCUGAGC----------UGGAGCU------CUUGCUGGUGUGAGUGCCAUGAGCGAGUCUGGUUGCGCUGGGACUUAUAUGGCC ...((.((((((((......)))((((.(((----------.(.((((------((((((.(((.(....)))).))))))...)))).)))).))))..))))).)) ( -30.30) >consensus GCUGGGUGUGUGCC_GAGUGGGUGCCAGAGCUCCGCAGGACUGGAGCU__UGCUCCUGCUGGGGUGAGUGCCAUGUGCGAGUCUGUUUGCGCUGGGACUUAAAUGGCC ...........(((..((..((.((...(((((((......)))))))...)).))..))....(((((.(((.(((((((....)))))))))).)))))...))). (-26.57 = -30.13 + 3.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:28:02 2006