| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,891,036 – 4,891,138 |
| Length | 102 |
| Max. P | 0.636996 |
| Location | 4,891,036 – 4,891,138 |
|---|---|
| Length | 102 |
| Sequences | 3 |
| Columns | 104 |
| Reading direction | forward |
| Mean pairwise identity | 85.57 |
| Mean single sequence MFE | -23.37 |
| Consensus MFE | -16.42 |
| Energy contribution | -16.20 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.12 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.636996 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4891036 102 + 20766785 CUCUGCUCUGCCUUCCUUUCCUAUCUCCUUUCUCAUCUGCUGCUGAUGUGCUGCAUCAGCUCAAGUUCACCUAUUCCCAAAGUGCUGGAGGGAAUG--GAUCUC .............(((.((((...((((........((...(((((((.....)))))))...))..(((...........)))..)))))))).)--)).... ( -23.60) >DroSim_CAF1 42936 99 + 1 CUCUGC-----UUUCCUUUCCUAUCUCCUUUCUCAUCUGCUGCUGAUGUGCUGCAUCAGCUCAAGUUCACCUAUUCCCAAAGUGCUGGAGGGAAUGGGGAUCUC ......-----...........((((((.(((((..((...(((((((.....)))))))...))...........(((......))).))))).))))))... ( -26.90) >DroYak_CAF1 43243 91 + 1 CUCUGC-----UCCUCUCU-CUUUCUCCUUUCUCAUCUGCUGCUGAUGCGCUGCAUCAGCUUAAGUUCACCUAUUCCCAAACUGCUGGAGG-------GAUCUC ......-----...(((((-((..(................((((((((...))))))))...((((............)))))..)))))-------)).... ( -19.60) >consensus CUCUGC_____UUUCCUUUCCUAUCUCCUUUCUCAUCUGCUGCUGAUGUGCUGCAUCAGCUCAAGUUCACCUAUUCCCAAAGUGCUGGAGGGAAUG__GAUCUC .......................(((((.............((((((((...))))))))...(((.................))))))))............. (-16.42 = -16.20 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:00:00 2006