| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,882,677 – 4,882,769 |
| Length | 92 |
| Max. P | 0.780965 |
| Location | 4,882,677 – 4,882,769 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 115 |
| Reading direction | reverse |
| Mean pairwise identity | 79.58 |
| Mean single sequence MFE | -27.08 |
| Consensus MFE | -16.72 |
| Energy contribution | -17.05 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.62 |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.780965 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4882677 92 - 20766785 UGUAGGGGAAAUUGCGGCAGCUUUGUAAUGCGGAAGUU-UUGCAAAACCCAAACGGAAAUAGAGCAAAUAUGUUUAAGCUGCCGCUGCAGGU----------------------U .............(((((((((((((((.((....)).-)))))))..((....)).....(((((....)))))..)))))))).......----------------------. ( -29.10) >DroVir_CAF1 47262 115 - 1 GAGCGGGGAUAUUGUGGCAGCUUUAUAAUGCGGAAGUUUUUGCAAAACCCAAACGGAAAUAGAGCAAAUAUGUUUAAACGGCUCUUGUUGUUGUUUUUGUUGUUGCUGCUGCACU ............((..(((((.......((((((....)))))).......(((((((((.(((((....))))).((((((....)))))))))))))))...)))))..)).. ( -30.20) >DroPse_CAF1 14932 91 - 1 UAGAGGGGAAAUUGCGGCAGCUUUGUAAUGCGGAAGUU-UUGCAAAACCCAAACGGAAAUAGAGCAAAUAUGUUUAAGCUUCUGUUGCACAU----------------------- ....(((......((....))(((((((.((....)).-))))))).))).(((((((.(.(((((....))))).)..)))))))......----------------------- ( -23.80) >DroWil_CAF1 25342 93 - 1 UGAAGGGGAAAUUGCGGCAGCUUUGUAAUGCGGAAGUU-UUGCAAAACCCAAACGGAAAUAGAGCAAAUAUGUUUAAGCUGCUGUUGCAAGCG---------------------U ...........(((((((((((((((((.((....)).-)))))))..((....)).....(((((....))))).....))))))))))...---------------------. ( -26.60) >DroMoj_CAF1 64118 107 - 1 AAGCGGGGAAAUUGUGUCAGCUUUGUAAUGCGGAAGUUUUUGCAAAAUCCAAACGGAAAUAGAGCAAAUAUGUUUAAGCGGCUCCUGUUGCUG------UUGUUGCUGCUG--CU .(((((.((....((((..(((((((..((((((....))))))...(((....))).)))))))..)))).....((((((....)))))).------...)).))))).--.. ( -29.00) >DroPer_CAF1 14955 91 - 1 UAGAGGGGAAAUUGCGGCAGCUUUGUAAUGCGGAAGUU-UUGCAAAACCCAAACGGAAAUAGAGCAAAUAUGUUUAAGCUUCUGUUGCACAU----------------------- ....(((......((....))(((((((.((....)).-))))))).))).(((((((.(.(((((....))))).)..)))))))......----------------------- ( -23.80) >consensus UAGAGGGGAAAUUGCGGCAGCUUUGUAAUGCGGAAGUU_UUGCAAAACCCAAACGGAAAUAGAGCAAAUAUGUUUAAGCUGCUGUUGCAGAU______________________U ....(((....((((((.((((((........)))))).))))))..))).(((((.....(((((....)))))......)))))............................. (-16.72 = -17.05 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:59 2006