Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,881,623 – 4,881,726 |
Length | 103 |
Max. P | 0.969497 |
Location | 4,881,623 – 4,881,726 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 76.33 |
Mean single sequence MFE | -18.55 |
Consensus MFE | -16.65 |
Energy contribution | -16.40 |
Covariance contribution | -0.25 |
Combinations/Pair | 1.27 |
Mean z-score | -1.93 |
Structure conservation index | 0.90 |
SVM decision value | 1.64 |
SVM RNA-class probability | 0.969497 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4881623 103 - 20766785 UUUCUAAUUCGUUGCGUAUUGUGUUUUAUUUCGUUAUAUUUCAAAUUUAGAAUACCUAACGAAAUGUAAGUACAAGCGCAAAAU-CAAA-AGACUAAAGACUGG----U ..(((......((((((.((((((((((((((((((...(((.......)))....)))))))))).))))))))))))))...-....-)))...........----. ( -21.72) >DroVir_CAF1 46000 99 - 1 CAUCUAGUGCCUUGUGCAUUGUAUUUUGUUUCGUUAUAUUUCAAAUUUAGAAAACCUCGCGAAAUGUAAGUACAAGUAUAAACAAAAAA-UGACCAAAAG--------- (((....((..((((((.((((((((((((((((....((((.......)))).....)))))))).)))))))))))))).))....)-))........--------- ( -19.00) >DroPse_CAF1 13940 109 - 1 UAUCUAAUGCCGUGUGUAUUGUAUUUUGUUUCGUUAUAUUUCAAAUAUAGAAUACAAAACGAAAUGUAAGUACAAGCACAAACAACAAAUCUACCAAAAACCACAACAA .......((...(((((.(((((((((((((((((....(((.......))).....))))))))).)))))))))))))..))......................... ( -19.50) >DroGri_CAF1 46601 89 - 1 UAUCUAAUUCCGUGUCUAUUGAAUUUUGUUUCGUUAUAUUUCAAUUAUAGAAUACCUAACGAAAUGUAAGUACAAGCAUAAU-----------CCAAAAG--------- ...........((((...(((.((((((((((((((...(((.......)))....)))))))))).)))).)))))))...-----------.......--------- ( -12.20) >DroAna_CAF1 15244 101 - 1 UAUCUAAUGCCAUGUGUAUUGUGUUUUGUUUCGUUAUAUUUCAACUUUAGAAGACCUAAAGAAAUGUAAGUACAAGCACAAAAA-CAAU-GUUU--AAACUUGG----U ........((((.((...((((((((.((..(.(((((((((...(((((.....))))))))))))))).))))))))))(((-(...-))))--..)).)))----) ( -19.40) >DroPer_CAF1 13964 109 - 1 UAUCUAAUGCCGUGUGUAUUGUAUUUUGUUUCGUUAUAUUUCAAAUAUAGAAUACAAAACGAAAUGUAAGUACAAGCACAAACAACAAAUCUACCAAAAACCACAACAA .......((...(((((.(((((((((((((((((....(((.......))).....))))))))).)))))))))))))..))......................... ( -19.50) >consensus UAUCUAAUGCCGUGUGUAUUGUAUUUUGUUUCGUUAUAUUUCAAAUAUAGAAUACCUAACGAAAUGUAAGUACAAGCACAAACA_CAAA_CUACCAAAAAC________ ............(((((.((((((((((((((((((...(((.......)))....)))))))))).)))))))))))))............................. (-16.65 = -16.40 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:57 2006