Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,879,782 – 4,879,873 |
Length | 91 |
Max. P | 0.837010 |
Location | 4,879,782 – 4,879,873 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 93 |
Reading direction | reverse |
Mean pairwise identity | 86.56 |
Mean single sequence MFE | -30.48 |
Consensus MFE | -23.04 |
Energy contribution | -23.18 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.17 |
Mean z-score | -3.29 |
Structure conservation index | 0.76 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837010 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4879782 91 - 20766785 CCAUUUGCACCCGC--UUUUCCUGCUGGUGCGUUCAUUGUGAGCGCCGAGUGGAAAAUGUGGAAUGGAAUGCUGCUAUGCAUUUCUUAAACCA ..........((((--((((((.(((.(.((((((.....))))))).))))))))).))))...(((((((......)))))))........ ( -33.60) >DroSec_CAF1 13010 90 - 1 -CAUUUUCUACCGC--UUUUCCUGCUGGUGCGUUCAUUGUGAGCGCCGAGUGGAAAAUGUGGAAUGGAAUGCUGCUAUGCAUUUCUUAAACCA -.........((((--((((((.(((.(.((((((.....))))))).))))))))).))))...(((((((......)))))))........ ( -33.80) >DroSim_CAF1 31614 90 - 1 -CAUUUUCUACCGC--UUUUCCUGCUGGUGCGUUCAUUGUGAGCGCCGAGUGGAAAAUGUGGAAUGGAAUGCUGCUAUGCAUUUCUUAAACCA -.........((((--((((((.(((.(.((((((.....))))))).))))))))).))))...(((((((......)))))))........ ( -33.80) >DroEre_CAF1 27304 84 - 1 -CAU-UUCUCCCGC--UAUUCCUGCUGCUGCGUUCAUUGUGAGCGCCGAGUGGAAAAUGUGG-----AAUGCUGCCAUGCAUUUCUUAAACCA -...-.....((((--..((((.(((.(.((((((.....)))))).))))))))...))))-----(((((......))))).......... ( -24.90) >DroYak_CAF1 31656 85 - 1 -AAUUUUCUCCCGC--UUUUCCUGCUGGUGCGUUCAUUGUGAGCGCCGAGUGGAAAAUGUGG-----AAUGCUGCUAUGCAUUUCUUAAACCA -.........((((--((((((.(((.(.((((((.....))))))).))))))))).))))-----(((((......))))).......... ( -29.60) >DroAna_CAF1 13178 88 - 1 ACAAUUUCCUUUGCAUCAUCCCUGCUGGUGCAUUCACAGCGAGUGCCGAGCAGAAAAUGUGG-----AAUGCAGCUAUGCAUUUCUUAAACCA ............((((.....(((((.(.((((((.....))))))).)))))...))))((-----((((((....))))))))........ ( -27.20) >consensus _CAUUUUCUCCCGC__UUUUCCUGCUGGUGCGUUCAUUGUGAGCGCCGAGUGGAAAAUGUGG_____AAUGCUGCUAUGCAUUUCUUAAACCA ..........((((...(((((.(((.(.((((((.....))))))).))))))))..)))).....(((((......))))).......... (-23.04 = -23.18 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:55 2006