Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,878,541 – 4,878,651 |
Length | 110 |
Max. P | 0.567393 |
Location | 4,878,541 – 4,878,651 |
---|---|
Length | 110 |
Sequences | 3 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 84.47 |
Mean single sequence MFE | -17.03 |
Consensus MFE | -15.76 |
Energy contribution | -15.76 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -0.77 |
Structure conservation index | 0.93 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567393 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4878541 110 - 20766785 CCAGCCACCCCCUGCAUCCUGCCCCUGCCUCUGCCGUCCACACCCCCAACUCGGCCGCAAGUAUUUCUGGGACCAAAUUAUUUUCAUAGCUUUAGCUUAAAAGCUGAAAA .((((....(((.((.....))...(((....((((...............)))).))).........))).........((((...(((....))).)))))))).... ( -18.16) >DroSec_CAF1 11761 89 - 1 CCAGCCCC---------------------CCUGCCGUCCGCACCCCCAACUCGGCCGCAAGUAUUUCUGGGACCAAAUUAUUUUCAUAGCUUUAGCUUAAAAGCUGAAAA .((((..(---------------------((.((((...............))))(....).......))).........((((...(((....))).)))))))).... ( -16.46) >DroSim_CAF1 30356 89 - 1 CCAGCCCC---------------------CCUGCCGUCCGCACCCCCAACUCGGCCGCAAGUAUUUCUGGGACCAAAUUAUUUUCAUAGCUUUAGCUUAAAAGCUGAAAA .((((..(---------------------((.((((...............))))(....).......))).........((((...(((....))).)))))))).... ( -16.46) >consensus CCAGCCCC_____________________CCUGCCGUCCGCACCCCCAACUCGGCCGCAAGUAUUUCUGGGACCAAAUUAUUUUCAUAGCUUUAGCUUAAAAGCUGAAAA ((((............................((((...............))))(....).....))))................(((((((......))))))).... (-15.76 = -15.76 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:54 2006