| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,873,181 – 4,873,300 |
| Length | 119 |
| Max. P | 0.729484 |
| Location | 4,873,181 – 4,873,300 |
|---|---|
| Length | 119 |
| Sequences | 5 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 77.44 |
| Mean single sequence MFE | -22.66 |
| Consensus MFE | -5.48 |
| Energy contribution | -5.60 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.24 |
| SVM decision value | 0.42 |
| SVM RNA-class probability | 0.729484 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4873181 119 + 20766785 CAGGCACACAGCAAAAAAAACGUAACAUUUGAUUUACAUUUAGGAUGAUUAUGCAAAUCAUUCAGCUUACAAAACAACAGAUUGAUUUGUAUCAGCUCCAAUCAAAUUUGCGUUCAUUA ...((.....))......(((((((.((((((((........((((((((.....))))))))((((((((((.(((....))).))))))..))))..)))))))))))))))..... ( -27.30) >DroSec_CAF1 6719 110 + 1 -------ACAGCAAA--AAACGUAACAUUUGAUUUACAUUUAGGAUUAUUAUGCAAAUCAUCCAGCUUACAAAACAACAGAUUGAUUUGUAUCAGAUCAAAUGAAGUUUGCGUGCAUUA -------...(((..--((((....((((((((((.......((((.(((.....))).))))....((((((.(((....))).))))))..))))))))))..))))...))).... ( -24.40) >DroSim_CAF1 25275 106 + 1 -------ACAGCAAAA-AAACUUAACAUUUGAUUUACAUUUAGGAUGAUUAUGCAAAUCAUCCAGCUUACAAAACAACAGAUUGAAUUUUAUCAGAUCAAA-----UUUGCAUGCAUUA -------...((((..-.........(((((((((.......((((((((.....))))))))................(((........)))))))))))-----)))))........ ( -19.30) >DroEre_CAF1 20539 106 + 1 -------ACAGCAGA--AAUCUUGACGUUUGGCUUACUUUUAGGAUGAUU-UGCAUA---CACAGCCACCGAAACAACAGAUUGAUUUGUGUCGGCCCGGAUGAAAUGUGCGUUGUGUA -------...(((((--.(((((((.((.......))..)))))))..))-))).((---((((((..((((....(((((....))))).))))...(.((.....)).))))))))) ( -25.60) >DroYak_CAF1 24873 106 + 1 -------ACAGCAAA--AAUCUUGACAUUUGGUUUACUUUUAGCAUGAUU-UGCAUA---CACAGCUUUCAAAACAACUGAUUGAUUUGUAUCGGCUUAAAAGAAGUUUGCGUUCUUUA -------...(((((--..((((...................(((.....-)))...---...((((..((((.(((....))).))))....))))...))))..)))))........ ( -16.70) >consensus _______ACAGCAAA__AAACUUAACAUUUGAUUUACAUUUAGGAUGAUUAUGCAAAUCAUACAGCUUACAAAACAACAGAUUGAUUUGUAUCAGCUCAAAUGAAAUUUGCGUUCAUUA ..........(((((..........(((((((....................((..........))...............(((((....))))).)))))))...)))))........ ( -5.48 = -5.60 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:53 2006