Locus 1241

Sequence ID 2R_DroMel_CAF1
Location 4,861,533 – 4,861,627
Length 94
Max. P 0.500000
window2156

overview

Window 6

Location 4,861,533 – 4,861,627
Length 94
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 77.74
Mean single sequence MFE -15.46
Consensus MFE -0.90
Energy contribution -1.34
Covariance contribution 0.44
Combinations/Pair 1.08
Mean z-score -1.33
Structure conservation index 0.06
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4861533 94 + 20766785
AACACAUAAAUAUUUGCAAGCACACAGGAAAACGAUUGGUUAAACAC--AAAUUUUUCACAUGUUUGGAACCAGAACAUUCUGGGCAGAAAUCAAU
............(((((...((.(((.(((((...(((........)--))..)))))...))).))...(((((....))))))))))....... ( -17.70)
>DroSec_CAF1 4242 94 + 1
AACACAUAAAUAUUUGCAAGCACACAUGAAAACGAUUGGUUAAACAC--AAAUUUUUCACAUGUCUGGAAAUGGAAAAUUCUGUCCAGAAAUCAAU
......................((..((((((...(((........)--))..))))))..))((((((...(((....))).))))))....... ( -13.20)
>DroSim_CAF1 22771 94 + 1
AACACAUAAAUAUUUGCAAGCACACAUGAAAACGAUUGGUUAAACAC--AAAUUUUUCACAUGUUUGGAAAUGGAAAAUUCUGUCCAGAAAUCAAU
..........(((((.((((((....((((((...(((........)--))..))))))..)))))).))))).....((((....))))...... ( -14.20)
>DroEre_CAF1 18061 78 + 1
ACCAUAUUAAUAUGGGCCAGCC--CAGGAAAAUGAUUGGUAAAUCACUCAUAUUUCCCACAUG----------------UUUGGGCAGAAAUCAAU
.(((((....)))))....(((--(((((((((((.(((....))).)))).)))))......----------------..))))).......... ( -19.90)
>DroYak_CAF1 22362 94 + 1
GUAAUAUUAAUAUUUACAAGCACACAGGAAAAUGAUUGGUUAAACAC--AAAUUGUACACAAGAUUGGAACUUGCACAUUCUGGGCAGAAAUCAAU
((((.........))))..((...(((((...((...((((.....(--((.(((....)))..))).))))..))..))))).)).......... ( -12.30)
>consensus
AACACAUAAAUAUUUGCAAGCACACAGGAAAACGAUUGGUUAAACAC__AAAUUUUUCACAUGUUUGGAAAUGGAAAAUUCUGGGCAGAAAUCAAU
..................................(((((((..................((....))............(((....)))))))))) ( -0.90 =  -1.34 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:51 2006