Locus 1240

Sequence ID 2R_DroMel_CAF1
Location 4,861,352 – 4,861,445
Length 93
Max. P 0.648000
window2155

overview

Window 5

Location 4,861,352 – 4,861,445
Length 93
Sequences 4
Columns 93
Reading direction reverse
Mean pairwise identity 77.72
Mean single sequence MFE -15.35
Consensus MFE -9.30
Energy contribution -9.99
Covariance contribution 0.69
Combinations/Pair 1.28
Mean z-score -1.81
Structure conservation index 0.61
SVM decision value 0.24
SVM RNA-class probability 0.648000
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4861352 93 - 20766785
AAAAAGGAAAACAUAUAGUCGUGUGAAUCAAUGUCCAGAACAAAAAAAAACCGAAUAAUGGUUCUGAAUGAUUCAUUCGACGUAUAAUUUUAA
.............((((((((.((((((((...((.(((((...................))))))).)))))))).)))).))))....... ( -20.41)
>DroSim_CAF1 22624 91 - 1
AAA-AUUAAAACAUAUAGUCGUCUGAAUCAAUGUCCGUAACAUUAAAAAA-CGAAUUAUGGUUCUGAAUGAUUCAUUCGACGUAUAAUUUUAA
...-.((((((..((((((((..(((((((((((.....)))))......-.((((....)))).....))))))..)))).)))).)))))) ( -17.90)
>DroEre_CAF1 17884 91 - 1
AAA-AGUAAAACACAUAAUUGUGCGAAUCAAUGAGCAGAACAACUGAAAG-CGAAUAAUGGGUCCGAAUGAUUUAUUCGAUGUAUAAUUUGAA
...-.........((.(((((((((..........(((.....)))....-(((((((...(((.....)))))))))).))))))))))).. ( -13.10)
>DroYak_CAF1 22194 82 - 1
AAA-AGUAAAACAUAUAACUGUGUAAAUCAAUGGGCAGAACAAU---------AAAAUUGGGUGUG-AUGAUUUAUUCGAUGUAUAAUUUAAA
...-..((((..(((((.(...((((((((.((.((....((((---------...)))).)).))-.))))))))..).)))))..)))).. ( -10.00)
>consensus
AAA_AGUAAAACAUAUAAUCGUGUGAAUCAAUGUCCAGAACAAUAAAAAA_CGAAUAAUGGGUCUGAAUGAUUCAUUCGACGUAUAAUUUUAA
.................((((.((((((((.....((((((...................))))))..)))))))).))))............ ( -9.30 =  -9.99 +   0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:51 2006