| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,860,838 – 4,860,934 |
| Length | 96 |
| Max. P | 0.966790 |
| Location | 4,860,838 – 4,860,934 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | forward |
| Mean pairwise identity | 73.64 |
| Mean single sequence MFE | -20.42 |
| Consensus MFE | -12.47 |
| Energy contribution | -14.47 |
| Covariance contribution | 2.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.61 |
| SVM decision value | 1.60 |
| SVM RNA-class probability | 0.966790 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4860838 96 + 20766785 AUUGCCACAGAUUUGGACAUUGUCCAAAUCGACUUGUUUUCCCCUCGAGACGAGACGAGUCUCCCCACUUCCGAAA--------UCGCUUCUCCCAGUC---GCUAU ...((.((.(((((((((...)))))))))((((((((((..(.....)..))))))))))...............--------............)).---))... ( -24.40) >DroSec_CAF1 3578 94 + 1 AUUGCCACAGAUUUGGACAUUGUCCAAAUCGACUUGUUUUCCCCUCGAGACGAGACGAGACUUC-CACUUCCC-AA--------UCGCUUCUCUCACUC---ACUAU .........(((((((((...)))))))))................((((.(((.(((......-........-..--------)))))).))))....---..... ( -20.59) >DroSim_CAF1 22114 94 + 1 AUUGCCACAGAUUUGGACAUUGUCCAAAUCGACUUGUUUUCCCCUCGAGACGAGACGAGUCUCC-CACUUCCC-AA--------UCGCUUCUCUCACUC---GCUAU ...((....(((((((((...)))))))))((((((((((..(.....)..))))))))))...-........-..--------..))...........---..... ( -22.50) >DroEre_CAF1 17391 84 + 1 AUUGCCACAGUUUUGGACUUUGUCCAAAUCGACUUGUUUUCCCCUCGAGACGAGCCG-----C---CCGCCCG-AA--------UCGCUUUUCUCAGUC---GC--- ...((.((.(.(((((((...))))))).)................((((.((((((-----.---.....))-..--------..)))).)))).)).---))--- ( -16.90) >DroYak_CAF1 21685 83 + 1 AUUGCCACAGAUUUGGACAUUGUCCAAAUCGACUUGUUUUCCCCUCGCGACGAGACU------------CCCG-AA--------UCGCUUUCCUCAGUC---GCUAU .........(((((((((...)))))))))................((((((((...------------....-..--------........))).)))---))... ( -20.93) >DroAna_CAF1 3761 93 + 1 AUUGGCAACAAUUUGGACAAUGUCCAAAUCGUCUUGUUUUCACC-----------CGAACCUUCCCGACCCCGUCAGAGCCAUCUAGCAUCU---AGUCUAGUCUAU ..((((.((.((((((((...)))))))).))............-----------...........(((...)))...)))).(((((....---.).))))..... ( -17.20) >consensus AUUGCCACAGAUUUGGACAUUGUCCAAAUCGACUUGUUUUCCCCUCGAGACGAGACGAG_CUCC_CACUCCCG_AA________UCGCUUCUCUCAGUC___GCUAU ...((....(((((((((...)))))))))..((((((((......))))))))................................))................... (-12.47 = -14.47 + 2.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:50 2006