Locus 1234

Sequence ID 2R_DroMel_CAF1
Location 4,850,764 – 4,850,865
Length 101
Max. P 0.549156
window2145

overview

Window 5

Location 4,850,764 – 4,850,865
Length 101
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 94.72
Mean single sequence MFE -29.67
Consensus MFE -25.47
Energy contribution -25.37
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -1.93
Structure conservation index 0.86
SVM decision value 0.03
SVM RNA-class probability 0.549156
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4850764 101 - 20766785
GAUUAUAAUGGGCGCAGCAACAAAGGCGCGCGGCUCCAACAAUGGCUGCAUUAAUCCUUAAUAAUGGCGGCUAAUCUAGCCGAAAGAAAGUUGAUUAAGUC
(((((......((((..........))))((((((........))))))..)))))(((((((((..((((((...)))))).......))).)))))).. ( -26.70)
>DroEre_CAF1 7263 101 - 1
GGUUAUAAUGGGCGCAGCAACAAAGGCGCGCUGCUCCAACAAUGGCUGCAUUAAUCCUUAAUAAUGGCGGCUAAUCUAGCCGAAUGAAAGUUGAUUAAGCC
((((((..((((.(((((...........)))))))))...))))))((.((((((...........((((((...))))))(((....))))))))))). ( -27.80)
>DroYak_CAF1 11623 101 - 1
GAUUGUUAAGGGCGCAGCAACAAAGGCGCGCGGCUUCAACAAUGGCUGCAUUAAUCCUUAAUAAUGGCGGCUAAUCUAGCCGAAAGAAAGUUGAUUAAGCC
.((((((((((((((..........))))((((((........))))))......))))))))))...((((((((.((((....)...))))))).)))) ( -34.50)
>consensus
GAUUAUAAUGGGCGCAGCAACAAAGGCGCGCGGCUCCAACAAUGGCUGCAUUAAUCCUUAAUAAUGGCGGCUAAUCUAGCCGAAAGAAAGUUGAUUAAGCC
(((((......((((..........))))((((((........))))))..)))))(((((((((..((((((...)))))).......))).)))))).. (-25.47 = -25.37 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:41 2006