| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,849,986 – 4,850,082 |
| Length | 96 |
| Max. P | 0.980707 |
| Location | 4,849,986 – 4,850,082 |
|---|---|
| Length | 96 |
| Sequences | 3 |
| Columns | 102 |
| Reading direction | reverse |
| Mean pairwise identity | 88.93 |
| Mean single sequence MFE | -27.63 |
| Consensus MFE | -25.32 |
| Energy contribution | -24.44 |
| Covariance contribution | -0.88 |
| Combinations/Pair | 1.15 |
| Mean z-score | -2.84 |
| Structure conservation index | 0.92 |
| SVM decision value | 1.87 |
| SVM RNA-class probability | 0.980707 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4849986 96 - 20766785 GCAAAAAAAUAGUUAUUUAUGUGCACUCAUUUGUCCACUUAU------AUAUGCACAUAGAAAACGGGCACAAUGUCCUUUCGGCGGGUGUCCUUUGUAAGU (((((......(((.((((((((((...((..(....)..))------...)))))))))).)))((((((..((((.....)))).))))))))))).... ( -26.90) >DroEre_CAF1 6506 99 - 1 GCAGA-AAAUAGUUAUUUAUGUGCACUCAUUUGUUCCCCUAUACACGUAUAUGCACAUAGAAAACGGGCACAAUGUCCUUUCGG--GGUGUCCUUUGCAAGU (((((-.....(((.((((((((((...((.(((........))).))...)))))))))).)))((((((..((......)).--.))))))))))).... ( -31.00) >DroYak_CAF1 10875 94 - 1 ACAAA-AAAUAGUUAUUUAUGUGCGCUCAUUUGUUCUCUUAU------AUAUGCACAUAGAAAACGGGCACAAUGUCCUUUCGG-GGGUGUCCUUUGUAAGU (((((-.....(((.((((((((((...((..(....)..))------...)))))))))).)))((((((....(((....))-).))))))))))).... ( -25.00) >consensus GCAAA_AAAUAGUUAUUUAUGUGCACUCAUUUGUUCACUUAU______AUAUGCACAUAGAAAACGGGCACAAUGUCCUUUCGG_GGGUGUCCUUUGUAAGU (((((......(((.((((((((((..........................)))))))))).)))((((((.....((....))...))))))))))).... (-25.32 = -24.44 + -0.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:40 2006