Locus 123

Sequence ID 2R_DroMel_CAF1
Location 1,385,305 – 1,385,423
Length 118
Max. P 0.754651
window261

overview

Window 1

Location 1,385,305 – 1,385,423
Length 118
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 95.79
Mean single sequence MFE -35.92
Consensus MFE -32.94
Energy contribution -32.82
Covariance contribution -0.12
Combinations/Pair 1.11
Mean z-score -1.25
Structure conservation index 0.92
SVM decision value 0.48
SVM RNA-class probability 0.754651
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 1385305 118 + 20766785
AAAAUUGAACUGGGAUUUGGGGAUUGCGCAAAAGUAACUGAGCAAAUUUCCGUAGAUAGCUGAGCUCGGAGCGGCUGCUGCUGCUCUGACCAAAGAUUUGUGAGCA-CCAGACAAAUUG
..((((...((((.(((((.(((((((.((........)).))))...))).))))).(((.(..((((((((((....)))))))))).(((....)))).))).-))))...)))). ( -36.60)
>DroSec_CAF1 12535 118 + 1
AAAAUUGAACUGGGAUUUGGGGAUUGCGCAAAAGUAACUGAGCAAAUUUCCGUAGAUAGCUGAGCUCGGAGCGGCUGCUGCUGUUCUGCCCGAAGAUUUGCGAGCA-CCAGACAAAUUG
..((((...((((..(((((..(((((.((........)).)).)))..))((((((..((..(..(((((((((....)))))))))..)..)))))))))))..-))))...)))). ( -35.10)
>DroSim_CAF1 17230 118 + 1
AAAAUUGAACUGGGAUUUGGGGAUUGCGCAAAAGUAACUGAGCCAAUUUCCGUAGAUAGCUGAGCUCGGAGCGGCUGCUGCUGUUCUGCCCGAAGAUUUGCGAGCA-CCAGACAAAUUG
..((((...((((..(((((..((((.((............))))))..))((((((..((..(..(((((((((....)))))))))..)..)))))))))))..-))))...)))). ( -36.10)
>DroEre_CAF1 10334 119 + 1
AAAAUUGAACUGGGAUUUGGGGAUUGCGCAAAAGUAACUGAGCAAAUUUCCGCAGAUAGCUGAGCUCGGAGCGGCUGCUGCUGUGCUGCCCGAAGAUUUGCGAGCAACCAGACAAAUUC
.........((((.(((((.(((((((.((........)).))))...))).))))).(((..((((((.(((((.((....)))))))))))......)).)))..))))........ ( -37.40)
>DroYak_CAF1 8519 119 + 1
AAAAUUGAACUGGGAUUUGGGGAUUGCGCAAAAGUAACUGAGCAAAUUUCCGCAGAUAGCUAAGCUCAGAGCGGCUGCUGCUGUGCUGCCCGAAGAUUUGCGAGCAACCAGACAAAUUG
.............((((((.((.((((((....))......((((((((..(((((((((..((((......))))...))))).))))....))))))))..))))))...)))))). ( -34.40)
>consensus
AAAAUUGAACUGGGAUUUGGGGAUUGCGCAAAAGUAACUGAGCAAAUUUCCGUAGAUAGCUGAGCUCGGAGCGGCUGCUGCUGUUCUGCCCGAAGAUUUGCGAGCA_CCAGACAAAUUG
..((((...((((.(((((.(((((((.((........)).))))...))).)))))......((((((((((((....))))))))...(((....))).))))..))))...)))). (-32.94 = -32.82 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:27:59 2006