Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,837,402 – 4,837,508 |
Length | 106 |
Max. P | 0.668770 |
Location | 4,837,402 – 4,837,508 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 86.41 |
Mean single sequence MFE | -26.84 |
Consensus MFE | -21.75 |
Energy contribution | -21.59 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.24 |
Mean z-score | -1.60 |
Structure conservation index | 0.81 |
SVM decision value | 0.29 |
SVM RNA-class probability | 0.668770 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4837402 106 + 20766785 AGUAUUUGCGAAGCUCACUUAAAU-CAGAUAUUUUUCCCAGUGCAAUUGUAGCUGAGGCACCGCCUUCGGUGGCAAAUUCAAUUAAAUAACUGCACAGAAAACUUUC .(((((((..(((....)))....-)))))))(((((...(((((.((((.((((((((...))).))))).))))(((......)))...))))).)))))..... ( -21.20) >DroSec_CAF1 7917 106 + 1 AGUAUUUGCAAAGCCCACUAAAGC-CAAAUAUUUUUCUCAGUGCAGUUGUAGCUGGGGCAGCGCCUUCGGCGGCAAAUUCAAUUAAAUAACUGCACAGAAAACUUUC .(((((((....((........))-)))))))((((((..((((((((((.((((...))))(((......)))............))))))))))))))))..... ( -28.70) >DroSim_CAF1 10824 103 + 1 AGUAUUUUGGAA---CACUAAAGC-CAAAUAUUUUUCUCAGUGCAAGUGUAGCUGGGGCAGCGCCUUCGGUGGCAAAUUCAAUUAAAUAACUGCACAGAAAACUUUC .....(((((..---........)-))))...((((((..(((((..(((.((((...))))(((......)))............)))..)))))))))))..... ( -22.20) >DroEre_CAF1 13011 107 + 1 AAUGUUUGCGAAGCGCACUGGGGCGUAGGUAUUUUUCCCAGUGCAGUUGUAGCUGAACCAGCGCCUUCGGUGGCAAAUUCAAUUAAAUAACUGCACAGAAAACUUUC ...((((.(...(((((((((((.(........).)))))))))((((((.((((...))))(((......)))............))))))))...).)))).... ( -32.60) >DroYak_CAF1 8987 107 + 1 AAUGUUCGCAAAGCUCACUAAAGCAUAGACGUUUUUCGCAGUGCAGUUGUAGCUGAACCAGCGCCUUCGGUGGCAAAUUCAAUUAAAUAACUGCACAGAAAACUUUC ....(((((...(((......)))...((......)))).((((((((((.((((...))))(((......)))............)))))))))).)))....... ( -29.50) >consensus AGUAUUUGCGAAGCUCACUAAAGC_CAGAUAUUUUUCCCAGUGCAGUUGUAGCUGAGGCAGCGCCUUCGGUGGCAAAUUCAAUUAAAUAACUGCACAGAAAACUUUC .(((((((.................)))))))(((((...((((((((((.((((...))))(((......)))............)))))))))).)))))..... (-21.75 = -21.59 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:28 2006