Locus 1221

Sequence ID 2R_DroMel_CAF1
Location 4,831,174 – 4,831,285
Length 111
Max. P 0.824256
window2125

overview

Window 5

Location 4,831,174 – 4,831,285
Length 111
Sequences 6
Columns 114
Reading direction reverse
Mean pairwise identity 86.19
Mean single sequence MFE -22.98
Consensus MFE -20.20
Energy contribution -20.28
Covariance contribution 0.08
Combinations/Pair 1.13
Mean z-score -1.80
Structure conservation index 0.88
SVM decision value 0.69
SVM RNA-class probability 0.824256
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4831174 111 - 20766785
UUUCAGCAACUUGCCGCACAGGCAGCUGCUGCAAGGCAUCAGACAACCCACCAGCAGCAUUCACUAUCGCACCGCCAACAUACGCAAC---AACAUACGCAUCCACAUCAACAG
.....((....((((.....))))(((((((...((..........))...)))))))..........))...((........))...---....................... ( -22.30)
>DroPse_CAF1 3115 95 - 1
UUUCAGCAUUUGGCCGCACAGGCCGCUGCUGCGAGGCAUACG---------CAGUCGCAAUCGCAAUCGCACCACCAGCAAUCGCACCGCCAACACCCCCAUUC----------
.....((....((((.....))))((((.(((((.((....)---------)..)))))...((....)).....))))....))...................---------- ( -26.40)
>DroSec_CAF1 1742 111 - 1
UUUCAGCAACUUGCCGCACAGGCAGCUGCUGCACGGCAUCAGACAACCCACCAGCAGCAUUCACUAUCGCACCGCCAACAUCCGCAAC---AACAUACGCAUCCACAUCAACAG
.....((....((((.....))))(((((((...((..........))...)))))))..........))...((........))...---....................... ( -22.30)
>DroSim_CAF1 1096 111 - 1
UUUCAGCAACUUGCCGCACAGGCAGCUGCUGCACGGCAUCAGACAACCCACCAGCAGCAUUCACUAUCGCACCGCCAACAUCCGCAAC---AACAUACGCAUCCACAUCAACAG
.....((....((((.....))))(((((((...((..........))...)))))))..........))...((........))...---....................... ( -22.30)
>DroEre_CAF1 7090 111 - 1
UUCCAGCAACUUGCCGCACAGGCAGCUGCUGCACGGCAUCAGACAACCCACCAGCAGCAUUCACUAUCGCACCGCCAACAUCCGCAAC---AACAUACGCAUCCACAUCAACAG
.....((....((((.....))))(((((((...((..........))...)))))))..........))...((........))...---....................... ( -22.30)
>DroYak_CAF1 2876 111 - 1
UUUCAGCAACUUGCCGCACAGGCAGCUGCUGCACGGCAUCAGACAACCCACCAGCAGCAUUCACUAUCGCACCGCCAACAUCCGCAAC---AACAUACGCAUCCACAUCAACAG
.....((....((((.....))))(((((((...((..........))...)))))))..........))...((........))...---....................... ( -22.30)
>consensus
UUUCAGCAACUUGCCGCACAGGCAGCUGCUGCACGGCAUCAGACAACCCACCAGCAGCAUUCACUAUCGCACCGCCAACAUCCGCAAC___AACAUACGCAUCCACAUCAACAG
.....((....((((.....))))(((((((...((..........))...)))))))..........))............................................ (-20.20 = -20.28 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:22 2006