Locus 1219

Sequence ID 2R_DroMel_CAF1
Location 4,829,878 – 4,829,974
Length 96
Max. P 0.604762
window2122

overview

Window 2

Location 4,829,878 – 4,829,974
Length 96
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 84.80
Mean single sequence MFE -39.87
Consensus MFE -28.73
Energy contribution -30.07
Covariance contribution 1.34
Combinations/Pair 1.07
Mean z-score -2.37
Structure conservation index 0.72
SVM decision value 0.14
SVM RNA-class probability 0.604762
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4829878 96 + 20766785
ACCGCUGCCAGCA-----CUGGCGUCUCCGAUGAAGCUUUUGGACUUCUUGGAGGCGCUCAGUGUCUCCCGAUAGCUGCGGAGUCGUACGCUGGCGCUGUG
((.((.(((((((-----(((((((((((((.(((((.....).)))))))))))))).))))(.((((((.....)).)))).)....)))))))).)). ( -47.90)
>DroPse_CAF1 1761 96 + 1
UC-----CCUGCAUUACUCCCGCGUCGCCGAUGAAGCUCUUCGACUUCUUCGACGCGCUCAACGUCUCACGAUAGCUUCUCAGCCGCAUGCUGGCGCUGUG
..-----.............((((.((((((.((((((..((((.....))((((.......))))....)).))))))))(((.....))))))).)))) ( -25.20)
>DroSec_CAF1 446 96 + 1
ACCGCUGCCAGCA-----CUGGCGUCUCCGAUGAAGCUCUUGGACUUCUUGGAGGCGCUCAGUGUCUCCCGAUAGCUGCGGAGUCGUACGCUGGCGCUGUG
((.((.(((((((-----(((((((((((((.(((((.....).)))))))))))))).))))(.((((((.....)).)))).)....)))))))).)). ( -47.90)
>DroEre_CAF1 5779 96 + 1
ACCGCUGCCAGCA-----CUGGCGUCUCCGAUGAAGCUCUUGGACUUCUUGGAGGCGCUCAGUGUCUCCCGAUAGCUACGGAGUCGUACGCUGGCGCUGUG
((.((.(((((((-----(((((((((((((.(((((.....).)))))))))))))).))))(.((((..........)))).)....)))))))).)). ( -46.50)
>DroYak_CAF1 1574 96 + 1
ACCGCUGCCAGCA-----CUGGCGUCUCCGAUGAAGCUCUUGGACUUCUUGGAGGCGCUCAGUGUCUCCCGAUAGCUACGGAGUCGUACGCUGGCGCUGUG
((.((.(((((((-----(((((((((((((.(((((.....).)))))))))))))).))))(.((((..........)))).)....)))))))).)). ( -46.50)
>DroPer_CAF1 5648 96 + 1
UC-----CCUGCAUUACUCCCGCGUCGCCGAUGAAGCUCUUCGACUUCUUCGACGCGCUCAACGUCUCACGAUAGCUUCUCAGCCGCAUGCUGGCGCUGUG
..-----.............((((.((((((.((((((..((((.....))((((.......))))....)).))))))))(((.....))))))).)))) ( -25.20)
>consensus
ACCGCUGCCAGCA_____CUGGCGUCUCCGAUGAAGCUCUUGGACUUCUUGGAGGCGCUCAGUGUCUCCCGAUAGCUACGGAGUCGUACGCUGGCGCUGUG
......((((((.........((((((((((.(((((.....).))))))))))))))....((.((((..........)))).))...))))))...... (-28.73 = -30.07 +   1.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:20 2006