Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,829,315 – 4,829,418 |
Length | 103 |
Max. P | 0.586595 |
Location | 4,829,315 – 4,829,418 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.16 |
Mean single sequence MFE | -47.08 |
Consensus MFE | -30.82 |
Energy contribution | -30.86 |
Covariance contribution | 0.04 |
Combinations/Pair | 1.12 |
Mean z-score | -1.64 |
Structure conservation index | 0.65 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.586595 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4829315 103 + 20766785 UUGGUGAAUUGG--CCGAAG---------CACAGCCUC------UGCGUUGGAGUUCAUGAGGGCCUCAUGCCCGUCCAAUGGACGGGGGUGUCCCUACUGAACGAAUGCGCCUUCUUUC ..((((.(((..--((((.(---------((.......------))).)))).(((((..((((...(((.(((((((...))))))).))).))))..))))).))).))))....... ( -40.80) >DroPse_CAF1 1166 120 + 1 UUGGGGGGGCGACGACGACGGUUACUCUCGACAGCAUCCUCGUGGGCGUUGGAGUUCAUGAGGGCCGCAUGCCGGUGUAGUGGACCGGGGUGUCUCUGCUGAAGGAGUGCGCCUUCUUUC ..(((((((((.((....))..(((((.(..((((((((((((((((......)))))))))))..((((.(((((.......))))).))))...)))))..))))))))))))))).. ( -53.60) >DroEre_CAF1 5216 103 + 1 UUGGUGAAAUGG--CCGAAG---------CACAGCCUC------UGCGUUGGAGUUCAUGAGGGCCGCAUGCCCGUCCAGUGGACGGGGGUGUCCCUGCUGAACGAAUGCGCCUUCUUUC ..((((......--((((.(---------((.......------))).)))).(((((..((((..((((.(((((((...))))))).))))))))..))))).....))))....... ( -41.80) >DroYak_CAF1 1011 103 + 1 UUGGUGAAAUGG--CCGAAG---------CACAGCCUC------UGCGUUGGAGUUCAUGAGGGCCGCAUGCCCGUCCAGUGGACGGGCGUGUCCCUGCUGAACGAAUGCGCCUUCUUUC ..((((......--((((.(---------((.......------))).)))).(((((..((((..((((((((((((...))))))))))))))))..))))).....))))....... ( -45.60) >DroPer_CAF1 5053 120 + 1 UUGGGGGGGCGACGACGACGGUUACUCUCGACAGCAUCCUCGUGGGCGUUGGAGUUCAUGAGGGCCGCAUGCCGGUGUAGUGGACCGGGGUGUCUCUGCUGAAGGAGUGCGCCUUCUUUC ..(((((((((.((....))..(((((.(..((((((((((((((((......)))))))))))..((((.(((((.......))))).))))...)))))..))))))))))))))).. ( -53.60) >consensus UUGGUGAAAUGG__CCGAAG_________CACAGCCUC______UGCGUUGGAGUUCAUGAGGGCCGCAUGCCCGUCCAGUGGACGGGGGUGUCCCUGCUGAACGAAUGCGCCUUCUUUC .............................................((((....(((((..((((..((((.(((((((...))))))).))))))))..)))))....))))........ (-30.82 = -30.86 + 0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:19 2006