| Sequence ID | 2R_DroMel_CAF1 |
|---|---|
| Location | 4,828,922 – 4,829,014 |
| Length | 92 |
| Max. P | 0.929336 |
| Location | 4,828,922 – 4,829,014 |
|---|---|
| Length | 92 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 69.37 |
| Mean single sequence MFE | -19.61 |
| Consensus MFE | -11.84 |
| Energy contribution | -12.73 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.06 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.60 |
| SVM decision value | 1.20 |
| SVM RNA-class probability | 0.929336 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4828922 92 + 20766785 AACAAAUUGGCGCCCAAUGUGGGGCUG-AAAAUAGGCUACACUCAGCAUGAAAAUAAUUAUUUUCCCCA---------------------------CAAGACGCAAAUCAUUUAUCAACA .........(((.(...((((((((((-(.............)))))..((((((....))))))))))---------------------------)).).)))................ ( -21.02) >DroEre_CAF1 4815 88 + 1 AACAAAUUGGCGCCCAAUGUGGGGCCACACAAAAGGCUGCACUCAGCAUGAAAAUAAUUAUUUUCUUCA--------------------------------CGCAAAUCAUUUAUCAACA .......((((.(((.....)))))))........((((....))))..((((((....))))))....--------------------------------................... ( -17.80) >DroYak_CAF1 592 118 + 1 UAGAAAUUGGCGCCCACUGUGGGGUGUUGUAAAA--CUGCACUCAGCGUGAAAAUAAUUCUUUUCCUCACUUUUUCAUUUUAUCAAAAGCAAGCGACAAGACGCAAAUCAUUUAUCAACA .........(((..(((.((.((((((.(.....--).)))))).)))))........((((.((((..(((((..........)))))..)).)).)))))))................ ( -20.00) >consensus AACAAAUUGGCGCCCAAUGUGGGGCCA_AAAAAAGGCUGCACUCAGCAUGAAAAUAAUUAUUUUCCUCA___________________________CAAGACGCAAAUCAUUUAUCAACA .........((((.....(((.((((........)))).)))...))..((((((....)))))).....................................))................ (-11.84 = -12.73 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:18 2006