Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,824,153 – 4,824,250 |
Length | 97 |
Max. P | 0.981638 |
Location | 4,824,153 – 4,824,250 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 94.01 |
Mean single sequence MFE | -16.94 |
Consensus MFE | -14.62 |
Energy contribution | -15.10 |
Covariance contribution | 0.48 |
Combinations/Pair | 1.05 |
Mean z-score | -1.76 |
Structure conservation index | 0.86 |
SVM decision value | 1.58 |
SVM RNA-class probability | 0.965482 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4824153 97 + 20766785 GCACUUCGGAGUGCUCCAUCCUCAAUUAUUUUUUAGUUAACAAUUUCUUUUGAUUCGAUUUCUCGUCCUUUCUGUUAUUCUUUGUAGCAUUUGUGCG ((((....(((((((.((.....(((((.....)))))((((...((....))..(((....))).......))))......)).))))))))))). ( -13.80) >DroSec_CAF1 14837 95 + 1 GCACUUCGGAGUGCUCCAUCCUCAUUUAUUUUUUAGUUAACAAUUUCUUUUGAUUCGAUUUCUCGUACU--CUGUUAUUCUUUGUAGCAUUUGUGCG ((((...(((((((..........................(((......)))....((....)))))))--))(((((.....)))))....)))). ( -17.80) >DroSim_CAF1 17103 97 + 1 GCACUUCGGAGUGCUCCAUCCUCAUUUAUUUUUUAGUUAACAAUUUCUUUUGAUUCGAUUUCUCGUACUCUCUGUUAUUCUUUGUAGCAUUUGUGCG ((((...(((((((..........................(((......)))....((....))))))))).((((((.....))))))...)))). ( -17.80) >DroEre_CAF1 15746 96 + 1 GCACUUCGGAGUGCUCCAUCCUCUUUA-AAUUUUAGUUAACAAUUUCUUUUGAUUCGAUUUCUCGUACUCUCUGUUAUUCUUUGUAGCAUUUGUGCG ((((...(((((((.............-............(((......)))....((....))))))))).((((((.....))))))...)))). ( -17.80) >DroYak_CAF1 17081 95 + 1 GCACUUCGGAGUGCUCCAUUCUCAUUU--AUUUUAGUUAACAAUUUCUUUUGAUUCGAUUUCUCGUACUCUCCGUUAUUCUUUGUAGCAAUUGUGCG ((((...(((((((.............--...........(((......)))....((....)))))))))..(((((.....)))))....)))). ( -17.50) >consensus GCACUUCGGAGUGCUCCAUCCUCAUUUAUUUUUUAGUUAACAAUUUCUUUUGAUUCGAUUUCUCGUACUCUCUGUUAUUCUUUGUAGCAUUUGUGCG ((((...(((((((..........................(((......)))....((....)))))))))..(((((.....)))))....)))). (-14.62 = -15.10 + 0.48)
Location | 4,824,153 – 4,824,250 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 94.01 |
Mean single sequence MFE | -15.52 |
Consensus MFE | -14.94 |
Energy contribution | -14.78 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -1.50 |
Structure conservation index | 0.96 |
SVM decision value | 1.89 |
SVM RNA-class probability | 0.981638 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4824153 97 - 20766785 CGCACAAAUGCUACAAAGAAUAACAGAAAGGACGAGAAAUCGAAUCAAAAGAAAUUGUUAACUAAAAAAUAAUUGAGGAUGGAGCACUCCGAAGUGC .((((...............((((((......(((....)))..((....))..))))))...................((((....))))..)))) ( -15.10) >DroSec_CAF1 14837 95 - 1 CGCACAAAUGCUACAAAGAAUAACAG--AGUACGAGAAAUCGAAUCAAAAGAAAUUGUUAACUAAAAAAUAAAUGAGGAUGGAGCACUCCGAAGUGC .((((...............((((((--....(((....)))..((....))..))))))...................((((....))))..)))) ( -15.10) >DroSim_CAF1 17103 97 - 1 CGCACAAAUGCUACAAAGAAUAACAGAGAGUACGAGAAAUCGAAUCAAAAGAAAUUGUUAACUAAAAAAUAAAUGAGGAUGGAGCACUCCGAAGUGC .((((...............((((((......(((....)))..((....))..))))))...................((((....))))..)))) ( -15.10) >DroEre_CAF1 15746 96 - 1 CGCACAAAUGCUACAAAGAAUAACAGAGAGUACGAGAAAUCGAAUCAAAAGAAAUUGUUAACUAAAAUU-UAAAGAGGAUGGAGCACUCCGAAGUGC .((((...............((((((......(((....)))..((....))..)))))).........-.........((((....))))..)))) ( -15.10) >DroYak_CAF1 17081 95 - 1 CGCACAAUUGCUACAAAGAAUAACGGAGAGUACGAGAAAUCGAAUCAAAAGAAAUUGUUAACUAAAAU--AAAUGAGAAUGGAGCACUCCGAAGUGC .((((.....((....)).....(((((.((.(((....)))............(((((......)))--))...........)).)))))..)))) ( -17.20) >consensus CGCACAAAUGCUACAAAGAAUAACAGAGAGUACGAGAAAUCGAAUCAAAAGAAAUUGUUAACUAAAAAAUAAAUGAGGAUGGAGCACUCCGAAGUGC .((((...............((((((......(((....)))..((....))..))))))...................((((....))))..)))) (-14.94 = -14.78 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:13 2006