Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,821,184 – 4,821,286 |
Length | 102 |
Max. P | 0.570849 |
Location | 4,821,184 – 4,821,286 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 103 |
Reading direction | reverse |
Mean pairwise identity | 94.50 |
Mean single sequence MFE | -14.32 |
Consensus MFE | -11.75 |
Energy contribution | -11.95 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.40 |
Structure conservation index | 0.82 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.570849 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4821184 102 - 20766785 GCAAAACAAAUAUAUUUAAAAUACAUUUGAACGCCUUCAGCGUUUUAUUCAUCAAGCAAAGCAAGAAAUGUUGAAUCGAAAGAAAAAGUCAAACAAAGCCAU- ((....(((((.(((.....))).)))))......(((((((((((..................)))))))))))((....))..............))...- ( -13.67) >DroSec_CAF1 11898 102 - 1 GCAAAACAAAUAUAUUUAAAAUACAUUUGAACGCCUUCAGCGUUUUAUUCUUCAAGCUAAGCAAGAAAUGUUGAAUCGAAAGAAAAAGUCAAACAAAGCCAU- ((....(((((.(((.....))).)))))......(((((((((((...(((......)))...)))))))))))((....))..............))...- ( -15.20) >DroSim_CAF1 14117 103 - 1 GCAAAACAAAUAUAUUUAAAAUACAUUUGAACGCCUUCAGCGUUUUAUUCAUCAAGCAAAGCAAGAAAUGUUGAAUCGAAAGAAAAAGUCAAACAAAGCCAUA ((....(((((.(((.....))).)))))......(((((((((((..................)))))))))))((....))..............)).... ( -13.67) >DroEre_CAF1 12784 97 - 1 GGAAAACAAAUAUAUUUAAAAUACAUUUGAACGCCUUCAGCGUUUUAUUCAUCAAG-----CAAGAAAUGUUGAAUCGAAAGAAAAAGUCAAGCAAAGCCAU- ((....(((((.(((.....))).)))))...((.(((((((((((..........-----...)))))))))))((....)).........))....))..- ( -16.42) >DroYak_CAF1 14123 97 - 1 GCAAAACAAAUAUAUUUAAAAUACAUUUGAACGCCUUCAGCGUUUUAUUCAUCAAA-----CAAGAAAUGUUGAAUCGAAACAAAAAGUCAAACAAAGCCAU- ((....(((((.(((.....))).)))))..((..(((((((((((..........-----...))))))))))).))...................))...- ( -12.62) >consensus GCAAAACAAAUAUAUUUAAAAUACAUUUGAACGCCUUCAGCGUUUUAUUCAUCAAGC_AAGCAAGAAAUGUUGAAUCGAAAGAAAAAGUCAAACAAAGCCAU_ ......(((((.(((.....))).)))))...((.(((((((((((..................)))))))))))((....))..............)).... (-11.75 = -11.95 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:11 2006