Locus 1213

Sequence ID 2R_DroMel_CAF1
Location 4,817,495 – 4,817,587
Length 92
Max. P 0.520958
window2112

overview

Window 2

Location 4,817,495 – 4,817,587
Length 92
Sequences 6
Columns 92
Reading direction forward
Mean pairwise identity 87.10
Mean single sequence MFE -38.15
Consensus MFE -31.76
Energy contribution -32.10
Covariance contribution 0.34
Combinations/Pair 1.28
Mean z-score -1.61
Structure conservation index 0.83
SVM decision value -0.02
SVM RNA-class probability 0.520958
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4817495 92 + 20766785
GGGCGGCGGACACGCCUCCACGAGAGCAGUCUGUCGCUGCUCCUGUUUCAUGAUGAAGCGCUGGGUGUCCUUGGCUUUUGAGGAGAGCAAAA
.((((((((((..(((((...))).)).)))))))))).((((((((((.....)))))((..((....))..)).....)))))....... ( -37.50)
>DroSec_CAF1 8403 92 + 1
GGGCGGCGGACACGCCUCCACCAGAGCGGUCUGUCGCUGCUCCUGUUUCAUGAUGAAGCGCUGGGUGUCCUUGGCUUUUGGGGAGAGAAAAA
.((((((((((.(((((.....)).))))))))))))).((((((((((.....)))))((..((....))..)).....)))))....... ( -39.40)
>DroSim_CAF1 9576 92 + 1
GGGUGGCGGACACGCCUCCACCAGAGCGGUCUGUCGCUGCUCCUGUUUCAUGAUGAAGCGCUGGGUGUCCUUGGCUUUUGGGGAGAGCAAAA
.((((((((((.(((((.....)).))))))))))))).((((((((((.....)))))((..((....))..)).....)))))....... ( -37.50)
>DroEre_CAF1 8455 92 + 1
GGGCGGCGGACACGCCUCCACUAGAGCGGUCUGUCGCUGCUCCUGUUUUAUGAUGAAGCGUUGGGUGUCCUUGGCUUUUGGGGACAGUAAAA
.((((((((((.(((.((.....)))))))))))))))((((.((((((.....))))))..))))(((((..(...)..)))))....... ( -35.50)
>DroYak_CAF1 10065 92 + 1
AGGCGGCGGACACGCCUCCACCAGAGCGGUCUGCCGCUGCUCCUGUUUCAUGAUGUAGCGCUGGGUGUCCUUGGCUUUUGGGGCGAGUAAAA
.((((((((((.(((((.....)).)))))))))))))(((((.(((.(.....).)))((..((....))..))....)))))........ ( -39.00)
>DroAna_CAF1 11405 88 + 1
GGGCGGCGGACAGGCGUCCACCAGCGCCGCCUGUCGCUGCUCUCGUUUCACGUGAUACCGCUCGGUGUCCUUCGCU----GGGAGACAAGAG
((((((((.(((((((.((....).).)))))))))))))))..(((((.((.((((((....))))))...))..----..)))))..... ( -40.00)
>consensus
GGGCGGCGGACACGCCUCCACCAGAGCGGUCUGUCGCUGCUCCUGUUUCAUGAUGAAGCGCUGGGUGUCCUUGGCUUUUGGGGAGAGAAAAA
.((((((((((.(((((.....)).))))))))))))).((((((((((.....)))))((..((....))..)).....)))))....... (-31.76 = -32.10 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:59:10 2006