Locus 1208

Sequence ID 2R_DroMel_CAF1
Location 4,805,632 – 4,805,746
Length 114
Max. P 0.980139
window2100

overview

Window 0

Location 4,805,632 – 4,805,746
Length 114
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 94.04
Mean single sequence MFE -32.06
Consensus MFE -25.50
Energy contribution -25.66
Covariance contribution 0.16
Combinations/Pair 1.08
Mean z-score -2.59
Structure conservation index 0.80
SVM decision value 1.85
SVM RNA-class probability 0.980139
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4805632 114 + 20766785
CCCCCUUUGAAAGGAAUUUCGCUCUCUGGCCUUUCCAAAAUUGUUGCUUUGAGAGGAUGUCUCCAAAAAUAAAUUAGUUGCGAAUUCCCAAAGCGCUGGAAUUCCUUUAAGAGC
....((((.(((((((((((((.((.(((...((((((....(((..((((.(((.....)))))))....)))...))).)))...))).)).)).))))))))))).)))). ( -30.10)
>DroSec_CAF1 16939 113 + 1
CC-CCUUUGAAAGGAAUUUCGCUCUCUGGCCUUUCCAAAAUUGUUGCUUUGAGAGGAUGUCUCCAAAAAUAAAUUAGUUGCGAAUUCCCAAAGCGCUGGAAUUCCUUUAAGAGC
..-.((((.(((((((((((((.((.(((...((((((....(((..((((.(((.....)))))))....)))...))).)))...))).)).)).))))))))))).)))). ( -30.10)
>DroSim_CAF1 16907 114 + 1
CCCCCUUUGAAAGGAAUUUCGCUCUCUGGCCUUUCCAAAAUUGUUGCUUUGAGAGGAUGUCUCCUAAAAUAAAUUAGUUGCGAAUUCCCAAAGCGCUGGAAUUCCUUUAAGAGC
....((((.(((((((((((((....(((.....)))........((((((.(((..(((...((((......))))..)))..))).)))))))).))))))))))).)))). ( -30.30)
>DroEre_CAF1 16872 114 + 1
CCCCCUCUAAAAGGAAUUUCGCUCUCUGGCCUUUCCAAAAUUGUUGCUUUGAGAGGAUGUCGCCAAGAAUAAAUUAGUUGCGAAUUCCAAAAGAGCAGGAAUUUCUUUAAGAGC
....((((.((((((((((((((((.(((((((((.(((........)))))))))...((((.(..((....))..).))))...)))..))))).))))))))))).)))). ( -32.80)
>DroYak_CAF1 14619 114 + 1
CCUACUCUAAAAGGAAUUUCCCUCUCUGGCCUUUCCAAAAUUGUUGCUUUGAGAGGAUGUCUCCAAGAAUAAAUUAGUUGGGAAUUCCGAAAGAGCAGGAAUUCCUUUAAGAGC
....((((.(((((((((((.((((.(((..(((((((..(((((.(((.((((.....)))).)))))))).....)))))))..)))..))))..))))))))))).)))). ( -37.00)
>consensus
CCCCCUUUGAAAGGAAUUUCGCUCUCUGGCCUUUCCAAAAUUGUUGCUUUGAGAGGAUGUCUCCAAAAAUAAAUUAGUUGCGAAUUCCCAAAGCGCUGGAAUUCCUUUAAGAGC
....((((.(((((((((((((.((.(((...((((((.....(((.(((..(((.....)))..))).))).....))).)))...))).)).)).))))))))))).)))). (-25.50 = -25.66 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:59 2006