Locus 1206

Sequence ID 2R_DroMel_CAF1
Location 4,804,704 – 4,804,801
Length 97
Max. P 0.967378
window2096

overview

Window 6

Location 4,804,704 – 4,804,801
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 96.29
Mean single sequence MFE -29.12
Consensus MFE -26.94
Energy contribution -27.58
Covariance contribution 0.64
Combinations/Pair 1.03
Mean z-score -1.58
Structure conservation index 0.93
SVM decision value 1.61
SVM RNA-class probability 0.967378
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4804704 97 - 20766785
AUGAAGUGAGAACAGCUGAUUUUGGCAAAGUAACUUGCGGUACCGUGGUGAUCGGGAAAACUAAAACGGUUAAGCCGUAGUUGCCGGCUUUGCUUUG
..((((..((..(.(((......)))...((((((.(((((((((((((..........)))...)))))...))))))))))).)..))..)))). ( -27.80)
>DroSec_CAF1 15964 97 - 1
AUGAAGUGAGAACAGCUGAUUUUGGCAAAGUAACUUGCGGUACCGUGGUGAUCGGGAAAACUGAAACGGUUAAGCCGUAGUUGCCGGCUUUGCUUUG
..((((..((..(.(((......)))...((((((.((((((((((.....((((.....)))).)))))...))))))))))).)..))..)))). ( -31.20)
>DroSim_CAF1 15903 97 - 1
AUGAAGUGAGAACAGCUGAUUUUGGCAAAGUAACUUGCGGUACCGUGGUGAUCGGGAAAACUGAAACGGUUAAGCCGUAGUUGCCGGCUUUGCUUUG
..((((..((..(.(((......)))...((((((.((((((((((.....((((.....)))).)))))...))))))))))).)..))..)))). ( -31.20)
>DroEre_CAF1 15814 95 - 1
AUGAAGUGAUAACAGCUGAUUUUGGCAAAGUAACUUGCGGUACCGUGGUGAUCGG--AAACUGAAACGGUUAAGCCGUAGUUGCCGGCUUUGCUUUG
..((((..(...(.(((......)))...((((((.((((((((((.....(((.--...).)).)))))...))))))))))).)...)..)))). ( -27.80)
>DroYak_CAF1 13605 97 - 1
AUGAAGUGAGAACAGCUGCUUUUGGCAAAAUAACUGGCGGUACCUUGGUGAUCAGGAAAACUGAAACGGUUAAGCCGUAGUUGCCGGCUUUGCUUUG
..((((..((..(.((.(((..((((....((((((.((((..((((.....))))...))))...)))))).)))).))).)).)..))..)))). ( -27.60)
>consensus
AUGAAGUGAGAACAGCUGAUUUUGGCAAAGUAACUUGCGGUACCGUGGUGAUCGGGAAAACUGAAACGGUUAAGCCGUAGUUGCCGGCUUUGCUUUG
..((((..((..(.(((......)))...((((((.((((((((((.....((((.....)))).)))))...))))))))))).)..))..)))). (-26.94 = -27.58 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:56 2006