Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,783,157 – 4,783,253 |
Length | 96 |
Max. P | 0.774025 |
Location | 4,783,157 – 4,783,253 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 100 |
Reading direction | forward |
Mean pairwise identity | 81.05 |
Mean single sequence MFE | -21.17 |
Consensus MFE | -15.97 |
Energy contribution | -15.65 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.28 |
Mean z-score | -1.64 |
Structure conservation index | 0.75 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.774025 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4783157 96 + 20766785 AAAAACUAACACAACA---UACUUGAAUAAUCAGCAUAUAAUACGCG-AUAUAGCGACAUGUUUAUUAUACGUCGGGAUUCGGUGCGGUUGCAUUGAGAC ................---..((((((((((.(((((......(((.-.....)))..))))).)))))...))))).((((((((....)))))))).. ( -18.30) >DroSec_CAF1 5812 95 + 1 -ACAACUGACACAACA---UACUUGAAUAAUCAGCAUAUAAUACGCG-AUAUAGCGACAUGUUCAUUAUACGUCGGGAUUCGGUGCGGUUGCAUUGAAAC -....(((((....((---....)).(((((.(((((......(((.-.....)))..))))).)))))..)))))..((((((((....)))))))).. ( -21.80) >DroSim_CAF1 5216 95 + 1 -ACAACUGACACAACA---UACUUGAAUAAUCAGCAUAUAAUACGCG-AUAUAGCGACAUGUUCAUUAUACGUCGGGAUUCGGUGCGGUUGCAUUGAGAC -....(((((....((---....)).(((((.(((((......(((.-.....)))..))))).)))))..)))))..((((((((....)))))))).. ( -21.50) >DroEre_CAF1 5980 90 + 1 --AAACUGACA--ACA---UACUUGAAUAAUCAGCA--UAAUACGCU-AUAUAGCGACAUGUUCAUUAUACGUCGGGACUCGGUGUGGUUGCAUUGAGAC --...(((((.--.((---....)).(((((.((((--(....((((-....))))..))))).)))))..)))))..((((((((....)))))))).. ( -24.20) >DroYak_CAF1 5974 79 + 1 --AAACUGACA----------------CAAUCAGCA--UAAUACGCG-AUAUAGCGACAUGUUCAUUAUACGUCGGGAUUCGGUGUGGUUGCAUUGAGAC --...(((((.----------------.(((.((((--(....(((.-.....)))..))))).)))....)))))..((((((((....)))))))).. ( -18.30) >DroAna_CAF1 5549 83 + 1 -AUUCCCGGCACAACACAACACUUGAAUAAUCAGCA--UAAUACGCGAAUAUAGCGACAUGUUCAUUAUACGCCGGGAUUC--------------AAGAC -..(((((((.(((........))).(((((.((((--(....(((.......)))..))))).)))))..)))))))...--------------..... ( -22.90) >consensus _AAAACUGACACAACA___UACUUGAAUAAUCAGCA__UAAUACGCG_AUAUAGCGACAUGUUCAUUAUACGUCGGGAUUCGGUGCGGUUGCAUUGAGAC .....(((((.................................(((.......)))....((.......)))))))..((((((((....)))))))).. (-15.97 = -15.65 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:53 2006