Locus 1203

Sequence ID 2R_DroMel_CAF1
Location 4,774,178 – 4,774,271
Length 93
Max. P 0.679917
window2092

overview

Window 2

Location 4,774,178 – 4,774,271
Length 93
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 80.35
Mean single sequence MFE -38.67
Consensus MFE -25.33
Energy contribution -24.95
Covariance contribution -0.38
Combinations/Pair 1.48
Mean z-score -1.59
Structure conservation index 0.66
SVM decision value 0.30
SVM RNA-class probability 0.679917
Prediction RNA

Download alignment: ClustalW | MAF

>2R_DroMel_CAF1 4774178 93 - 20766785
AGCCACUGCCCAAGUGUGUGGAACCCGCUGCCGGAGCACCUGCAACAUUAUGGUGUCCGCGGUGGCAGAUUUCUUGCCUCAAGAG-----GCGGGAAC
.((((((((....(((.((((...))))))).(((.((((...........)))))))))))))))....(((((((((....))-----))))))). ( -40.30)
>DroVir_CAF1 74729 98 - 1
GGUUACCGCUCAGAUGUGCGGCACGCGUUGCCGCAGCACCUGCAACAUUGUCGUUUCUGCCGUGGCCGAUUUUCUGCCGCAGCAGCAACAGCUGGAGG
.....(((((..(((((((((((.....)))))).((....)).)))))...(((.((((.(((((.(.....).))))).)))).)))))).))... ( -37.70)
>DroPse_CAF1 58049 93 - 1
CGCCACAGCUCAAGUGUGCGGAACGCGCUGUCGGAGCACCUGCAACAUCAUGGUUUCCGCUGUGGCGGACUUCCUGCCGCAGGAA-----GCGGCCGC
(((((((((...((((((.....))))))...((((.(((((......)).))))))))))))))))........(((((.....-----)))))... ( -41.10)
>DroSec_CAF1 54192 93 - 1
AGCCACUGCUCAAGUGUGUGGAACCCGCUGCCGCAGCACCUGCAACAUUAUGGUGUCCGCGGUGGCAGAUUUCUUGCCGCAAGAG-----GCGGGAAC
.((((((((....(((.(..(......)..)))).(((((...........)))))..))))))))....((((((((......)-----))))))). ( -38.70)
>DroEre_CAF1 53468 93 - 1
AGCCACUGCCCAAGUGUGUGGAACCCGCUGCCGGAGCACCUGCAACAUUGUGGUGUCCGCUGUGGCCGAUUUCUUGCCUCAAGAA-----GCGGGAGC
..(((((((....))).))))..((((((((((.((((((..((....))..).))..))).)))).....(((((...))))))-----)))))... ( -33.50)
>DroAna_CAF1 60195 93 - 1
UGCCACGGCUCAAGUAUGCGGGACUCGCUGUCGGAGCACUUGCAACAUUAUGGUGUCCGCCGUGGCGGAUUUCCUUCCUCAAGAG-----GAGGGAGC
.((((((((............(((.....)))(((.((((...........)))))))))))))))....(((((((((....))-----))))))). ( -40.70)
>consensus
AGCCACUGCUCAAGUGUGCGGAACCCGCUGCCGGAGCACCUGCAACAUUAUGGUGUCCGCCGUGGCAGAUUUCCUGCCGCAAGAG_____GCGGGAGC
.((((((((........(((.....)))....(((.((((...........)))))))))))))))....(((((((.............))))))). (-25.33 = -24.95 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:52 2006