Sequence ID | 2R_DroMel_CAF1 |
---|---|
Location | 4,758,805 – 4,758,902 |
Length | 97 |
Max. P | 0.594410 |
Location | 4,758,805 – 4,758,902 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 98 |
Reading direction | forward |
Mean pairwise identity | 81.50 |
Mean single sequence MFE | -21.61 |
Consensus MFE | -10.02 |
Energy contribution | -13.24 |
Covariance contribution | 3.22 |
Combinations/Pair | 1.09 |
Mean z-score | -2.72 |
Structure conservation index | 0.46 |
SVM decision value | 0.12 |
SVM RNA-class probability | 0.594410 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2R_DroMel_CAF1 4758805 97 + 20766785 -ACCACUGCACUUCACGAGUUGACUUCUUAAUGGGCCAAAAAUAGAAAUCCACUUGGCCAACUCACACACACACACUGGCGUACCGCCAGCAGUAACC -...(((((.......(((((..(........)((((((....(....)....)))))))))))............(((((...)))))))))).... ( -25.70) >DroSec_CAF1 38765 95 + 1 -ACCACUGCACUUCACGAGUUGCCUUCUUAAUGGGCCAAAAAUAGAAAUCCACUUGGUCAACUCACAC--ACACACUGGCGUACCGCCAGCAGUCACC -...(((((.......((((((((........))(((((....(....)....)))))))))))....--......(((((...)))))))))).... ( -24.30) >DroSim_CAF1 39749 95 + 1 -ACCACUGCACUUCACGAGUUGCCUUCUUAAUGGGCCAAAAAUAGAAAUCCACUUGGCCAACUCACAC--ACACACUGGCGUACCGCCAGCAGUCACC -...(((((.......((((((((........))(((((....(....)....)))))))))))....--......(((((...)))))))))).... ( -26.20) >DroEre_CAF1 37882 92 + 1 -ACCACUGCACUUCUCGCGUUGGCUUCUUAAUGUGCCAAAAAUAGAAAUCCACUUGGCCAACUCACAC--ACACACUGGCAU---GCCAGCAGUCACC -...(((((..((((....(((((..........)))))....)))).........((((........--......))))..---....))))).... ( -19.54) >DroYak_CAF1 38541 87 + 1 -ACCACUGCACUUCACGAGUUGGCUUCUUAAUGGGCCAAAAAUAGAAAUCCACUUGGCCAACUCACAC--ACACACUGGC--------AGCAGUCACC -...(((((.......(((((((((......((((.............))))...)))))))))...(--(.....))..--------.))))).... ( -21.62) >DroPer_CAF1 41233 84 + 1 GGCGACAGCCCUUCACACGCUGCCCU-UCAAUGGCGCUAAAAUAGAAAUCCACUUGGCCAACUCAACGUCAAACACUUGAAUA-------------AA (((....))).((((...((.(((..-.....)))))................(((((.........))))).....))))..-------------.. ( -12.30) >consensus _ACCACUGCACUUCACGAGUUGCCUUCUUAAUGGGCCAAAAAUAGAAAUCCACUUGGCCAACUCACAC__ACACACUGGCGUA__GCCAGCAGUCACC ....(((((.......((((((((........))(((((..............)))))))))))............((((.....))))))))).... (-10.02 = -13.24 + 3.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:58:51 2006